Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16265 and HMPREF1058_RS16260 are separated by 188 nucleotides HMPREF1058_RS16260 and HMPREF1058_RS16255 overlap by 4 nucleotides
HMPREF1058_RS16265: HMPREF1058_RS16265 - SLC13 family permease, at 718,880 to 720,742
_RS16265
HMPREF1058_RS16260: HMPREF1058_RS16260 - hotdog fold thioesterase, at 720,931 to 721,338
_RS16260
HMPREF1058_RS16255: HMPREF1058_RS16255 - isochorismate synthase, at 721,335 to 722,477
_RS16255
Position (kb) 720
721
722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 719.975 kb on + strand, within HMPREF1058_RS16265 at 719.975 kb on + strand, within HMPREF1058_RS16265 at 719.978 kb on - strand, within HMPREF1058_RS16265 at 719.988 kb on + strand, within HMPREF1058_RS16265 at 720.011 kb on + strand, within HMPREF1058_RS16265 at 720.164 kb on - strand, within HMPREF1058_RS16265 at 720.164 kb on - strand, within HMPREF1058_RS16265 at 720.188 kb on - strand, within HMPREF1058_RS16265 at 720.310 kb on + strand, within HMPREF1058_RS16265 at 720.422 kb on - strand, within HMPREF1058_RS16265 at 720.490 kb on + strand, within HMPREF1058_RS16265 at 720.580 kb on + strand at 720.581 kb on - strand at 720.581 kb on - strand at 720.629 kb on + strand at 720.683 kb on + strand at 720.716 kb on + strand at 720.716 kb on + strand at 720.724 kb on + strand at 720.743 kb on - strand at 720.784 kb on + strand at 720.785 kb on - strand at 720.853 kb on + strand at 720.883 kb on + strand at 720.891 kb on - strand at 720.927 kb on - strand at 721.041 kb on - strand, within HMPREF1058_RS16260 at 721.126 kb on - strand, within HMPREF1058_RS16260 at 721.151 kb on - strand, within HMPREF1058_RS16260 at 721.169 kb on + strand, within HMPREF1058_RS16260 at 721.255 kb on - strand, within HMPREF1058_RS16260 at 721.255 kb on - strand, within HMPREF1058_RS16260 at 721.257 kb on - strand, within HMPREF1058_RS16260 at 721.257 kb on - strand, within HMPREF1058_RS16260 at 721.265 kb on + strand, within HMPREF1058_RS16260 at 721.265 kb on + strand, within HMPREF1058_RS16260 at 721.265 kb on + strand, within HMPREF1058_RS16260 at 721.269 kb on + strand, within HMPREF1058_RS16260 at 721.269 kb on + strand, within HMPREF1058_RS16260 at 721.270 kb on - strand, within HMPREF1058_RS16260 at 721.349 kb on + strand at 721.350 kb on - strand at 721.351 kb on + strand at 721.351 kb on + strand at 721.352 kb on - strand at 721.356 kb on - strand at 721.550 kb on - strand, within HMPREF1058_RS16255 at 721.699 kb on - strand, within HMPREF1058_RS16255 at 721.701 kb on - strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.034 kb on + strand, within HMPREF1058_RS16255 at 722.089 kb on - strand, within HMPREF1058_RS16255 at 722.090 kb on + strand, within HMPREF1058_RS16255 at 722.114 kb on - strand, within HMPREF1058_RS16255 at 722.159 kb on + strand, within HMPREF1058_RS16255 at 722.160 kb on - strand, within HMPREF1058_RS16255 at 722.266 kb on - strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 719,975 + HMPREF1058_RS16265 0.59 -0.4 719,975 + HMPREF1058_RS16265 0.59 -0.1 719,978 - HMPREF1058_RS16265 0.59 -1.3 719,988 + HMPREF1058_RS16265 0.59 +0.3 720,011 + HMPREF1058_RS16265 0.61 +0.7 720,164 - HMPREF1058_RS16265 0.69 +0.7 720,164 - HMPREF1058_RS16265 0.69 +0.4 720,188 - HMPREF1058_RS16265 0.70 +0.2 720,310 + HMPREF1058_RS16265 0.77 -0.1 720,422 - HMPREF1058_RS16265 0.83 -0.2 720,490 + HMPREF1058_RS16265 0.86 -1.1 720,580 + -0.5 720,581 - -0.2 720,581 - -0.1 720,629 + -0.8 720,683 + -0.8 720,716 + -1.4 720,716 + +0.5 720,724 + -1.6 720,743 - +0.0 720,784 + -0.2 720,785 - +0.1 720,853 + -0.1 720,883 + +0.0 720,891 - -1.2 720,927 - -0.8 721,041 - HMPREF1058_RS16260 0.27 -0.9 721,126 - HMPREF1058_RS16260 0.48 -0.5 721,151 - HMPREF1058_RS16260 0.54 -1.4 721,169 + HMPREF1058_RS16260 0.58 -2.3 721,255 - HMPREF1058_RS16260 0.79 -0.5 721,255 - HMPREF1058_RS16260 0.79 +0.1 721,257 - HMPREF1058_RS16260 0.80 -0.6 721,257 - HMPREF1058_RS16260 0.80 -1.6 721,265 + HMPREF1058_RS16260 0.82 -3.4 721,265 + HMPREF1058_RS16260 0.82 -2.9 721,265 + HMPREF1058_RS16260 0.82 -4.7 721,269 + HMPREF1058_RS16260 0.83 -1.2 721,269 + HMPREF1058_RS16260 0.83 -3.2 721,270 - HMPREF1058_RS16260 0.83 -2.0 721,349 + -1.2 721,350 - -2.1 721,351 + -1.3 721,351 + +0.2 721,352 - +1.0 721,356 - -1.9 721,550 - HMPREF1058_RS16255 0.19 -2.0 721,699 - HMPREF1058_RS16255 0.32 -1.7 721,701 - HMPREF1058_RS16255 0.32 -0.1 721,854 + HMPREF1058_RS16255 0.45 -1.5 721,854 + HMPREF1058_RS16255 0.45 -2.2 721,855 - HMPREF1058_RS16255 0.45 -2.3 721,855 - HMPREF1058_RS16255 0.45 +1.2 721,855 - HMPREF1058_RS16255 0.45 +0.3 722,022 + HMPREF1058_RS16255 0.60 +0.0 722,022 + HMPREF1058_RS16255 0.60 -0.6 722,023 - HMPREF1058_RS16255 0.60 -0.8 722,023 - HMPREF1058_RS16255 0.60 -1.9 722,034 + HMPREF1058_RS16255 0.61 -0.8 722,089 - HMPREF1058_RS16255 0.66 -0.1 722,090 + HMPREF1058_RS16255 0.66 -1.7 722,114 - HMPREF1058_RS16255 0.68 -1.7 722,159 + HMPREF1058_RS16255 0.72 -0.3 722,160 - HMPREF1058_RS16255 0.72 -0.4 722,266 - HMPREF1058_RS16255 0.81 -0.8 722,316 + HMPREF1058_RS16255 0.86 +1.0 722,316 + HMPREF1058_RS16255 0.86 -0.4 722,316 + HMPREF1058_RS16255 0.86 -0.2 722,317 - HMPREF1058_RS16255 0.86 -0.2 722,317 - HMPREF1058_RS16255 0.86 -2.0
Or see this region's nucleotide sequence