Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15980 and HMPREF1058_RS15975 are separated by 83 nucleotides HMPREF1058_RS15975 and HMPREF1058_RS15970 are separated by 67 nucleotides HMPREF1058_RS15970 and HMPREF1058_RS15965 are separated by 12 nucleotides
HMPREF1058_RS15980: HMPREF1058_RS15980 - hypothetical protein, at 791,674 to 792,927
_RS15980
HMPREF1058_RS15975: HMPREF1058_RS15975 - saccharopine dehydrogenase family protein, at 793,011 to 794,204
_RS15975
HMPREF1058_RS15970: HMPREF1058_RS15970 - thioredoxin-dependent thiol peroxidase, at 794,272 to 794,718
_RS15970
HMPREF1058_RS15965: HMPREF1058_RS15965 - recombinase RecA, at 794,731 to 795,774
_RS15965
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 792.032 kb on - strand, within HMPREF1058_RS15980 at 792.046 kb on - strand, within HMPREF1058_RS15980 at 792.155 kb on + strand, within HMPREF1058_RS15980 at 792.156 kb on - strand, within HMPREF1058_RS15980 at 792.157 kb on + strand, within HMPREF1058_RS15980 at 792.158 kb on - strand, within HMPREF1058_RS15980 at 792.159 kb on + strand, within HMPREF1058_RS15980 at 792.159 kb on + strand, within HMPREF1058_RS15980 at 792.159 kb on + strand, within HMPREF1058_RS15980 at 792.160 kb on - strand, within HMPREF1058_RS15980 at 792.160 kb on - strand, within HMPREF1058_RS15980 at 792.160 kb on - strand, within HMPREF1058_RS15980 at 792.160 kb on - strand, within HMPREF1058_RS15980 at 792.176 kb on + strand, within HMPREF1058_RS15980 at 792.180 kb on + strand, within HMPREF1058_RS15980 at 792.180 kb on + strand, within HMPREF1058_RS15980 at 792.180 kb on + strand, within HMPREF1058_RS15980 at 792.181 kb on - strand, within HMPREF1058_RS15980 at 792.182 kb on + strand, within HMPREF1058_RS15980 at 792.183 kb on - strand, within HMPREF1058_RS15980 at 792.183 kb on - strand, within HMPREF1058_RS15980 at 792.229 kb on - strand, within HMPREF1058_RS15980 at 792.229 kb on - strand, within HMPREF1058_RS15980 at 792.242 kb on + strand, within HMPREF1058_RS15980 at 792.319 kb on + strand, within HMPREF1058_RS15980 at 792.319 kb on + strand, within HMPREF1058_RS15980 at 792.336 kb on + strand, within HMPREF1058_RS15980 at 792.375 kb on + strand, within HMPREF1058_RS15980 at 792.463 kb on + strand, within HMPREF1058_RS15980 at 792.481 kb on + strand, within HMPREF1058_RS15980 at 792.544 kb on - strand, within HMPREF1058_RS15980 at 792.614 kb on + strand, within HMPREF1058_RS15980 at 792.628 kb on + strand, within HMPREF1058_RS15980 at 792.629 kb on - strand, within HMPREF1058_RS15980 at 792.631 kb on - strand, within HMPREF1058_RS15980 at 792.631 kb on - strand, within HMPREF1058_RS15980 at 792.768 kb on - strand, within HMPREF1058_RS15980 at 792.768 kb on - strand, within HMPREF1058_RS15980 at 792.844 kb on - strand at 792.938 kb on - strand at 793.022 kb on - strand at 793.045 kb on + strand at 793.167 kb on - strand, within HMPREF1058_RS15975 at 793.180 kb on + strand, within HMPREF1058_RS15975 at 793.181 kb on - strand, within HMPREF1058_RS15975 at 793.196 kb on - strand, within HMPREF1058_RS15975 at 793.196 kb on - strand, within HMPREF1058_RS15975 at 793.250 kb on - strand, within HMPREF1058_RS15975 at 793.326 kb on + strand, within HMPREF1058_RS15975 at 793.376 kb on + strand, within HMPREF1058_RS15975 at 793.376 kb on + strand, within HMPREF1058_RS15975 at 793.438 kb on + strand, within HMPREF1058_RS15975 at 793.492 kb on - strand, within HMPREF1058_RS15975 at 793.922 kb on + strand, within HMPREF1058_RS15975 at 793.964 kb on + strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.972 kb on - strand, within HMPREF1058_RS15975 at 793.978 kb on - strand, within HMPREF1058_RS15975 at 794.030 kb on - strand, within HMPREF1058_RS15975 at 794.034 kb on + strand, within HMPREF1058_RS15975 at 794.036 kb on + strand, within HMPREF1058_RS15975 at 794.037 kb on - strand, within HMPREF1058_RS15975 at 794.113 kb on + strand at 794.179 kb on + strand at 794.224 kb on + strand at 794.224 kb on + strand at 794.280 kb on - strand at 794.360 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.427 kb on + strand, within HMPREF1058_RS15970 at 794.522 kb on + strand, within HMPREF1058_RS15970 at 794.596 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.609 kb on - strand, within HMPREF1058_RS15970 at 794.626 kb on - strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.665 kb on - strand, within HMPREF1058_RS15970 at 794.964 kb on - strand, within HMPREF1058_RS15965 at 795.115 kb on - strand, within HMPREF1058_RS15965 at 795.119 kb on + strand, within HMPREF1058_RS15965
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 792,032 - HMPREF1058_RS15980 0.29 -0.3 792,046 - HMPREF1058_RS15980 0.30 +0.2 792,155 + HMPREF1058_RS15980 0.38 -2.2 792,156 - HMPREF1058_RS15980 0.38 +0.0 792,157 + HMPREF1058_RS15980 0.39 -1.2 792,158 - HMPREF1058_RS15980 0.39 +0.1 792,159 + HMPREF1058_RS15980 0.39 -2.0 792,159 + HMPREF1058_RS15980 0.39 -0.5 792,159 + HMPREF1058_RS15980 0.39 -0.7 792,160 - HMPREF1058_RS15980 0.39 -0.5 792,160 - HMPREF1058_RS15980 0.39 +0.8 792,160 - HMPREF1058_RS15980 0.39 -0.6 792,160 - HMPREF1058_RS15980 0.39 -1.6 792,176 + HMPREF1058_RS15980 0.40 -0.2 792,180 + HMPREF1058_RS15980 0.40 -1.3 792,180 + HMPREF1058_RS15980 0.40 -0.2 792,180 + HMPREF1058_RS15980 0.40 +0.4 792,181 - HMPREF1058_RS15980 0.40 +0.1 792,182 + HMPREF1058_RS15980 0.41 +0.2 792,183 - HMPREF1058_RS15980 0.41 -1.2 792,183 - HMPREF1058_RS15980 0.41 -1.2 792,229 - HMPREF1058_RS15980 0.44 -0.2 792,229 - HMPREF1058_RS15980 0.44 +4.3 792,242 + HMPREF1058_RS15980 0.45 -1.4 792,319 + HMPREF1058_RS15980 0.51 -0.3 792,319 + HMPREF1058_RS15980 0.51 +0.2 792,336 + HMPREF1058_RS15980 0.53 -0.7 792,375 + HMPREF1058_RS15980 0.56 -0.3 792,463 + HMPREF1058_RS15980 0.63 +0.0 792,481 + HMPREF1058_RS15980 0.64 -1.1 792,544 - HMPREF1058_RS15980 0.69 -0.1 792,614 + HMPREF1058_RS15980 0.75 -0.3 792,628 + HMPREF1058_RS15980 0.76 -0.3 792,629 - HMPREF1058_RS15980 0.76 -0.9 792,631 - HMPREF1058_RS15980 0.76 -0.1 792,631 - HMPREF1058_RS15980 0.76 +0.3 792,768 - HMPREF1058_RS15980 0.87 -0.6 792,768 - HMPREF1058_RS15980 0.87 +0.1 792,844 - +1.9 792,938 - +1.3 793,022 - +0.9 793,045 + -0.8 793,167 - HMPREF1058_RS15975 0.13 +0.7 793,180 + HMPREF1058_RS15975 0.14 -0.6 793,181 - HMPREF1058_RS15975 0.14 -0.2 793,196 - HMPREF1058_RS15975 0.15 -1.4 793,196 - HMPREF1058_RS15975 0.15 -3.1 793,250 - HMPREF1058_RS15975 0.20 -1.8 793,326 + HMPREF1058_RS15975 0.26 -1.2 793,376 + HMPREF1058_RS15975 0.31 -1.2 793,376 + HMPREF1058_RS15975 0.31 -0.3 793,438 + HMPREF1058_RS15975 0.36 -0.8 793,492 - HMPREF1058_RS15975 0.40 -1.4 793,922 + HMPREF1058_RS15975 0.76 -3.0 793,964 + HMPREF1058_RS15975 0.80 -0.4 793,969 - HMPREF1058_RS15975 0.80 +0.1 793,969 - HMPREF1058_RS15975 0.80 +0.1 793,969 - HMPREF1058_RS15975 0.80 -0.4 793,969 - HMPREF1058_RS15975 0.80 -2.3 793,972 - HMPREF1058_RS15975 0.80 -1.8 793,978 - HMPREF1058_RS15975 0.81 +1.4 794,030 - HMPREF1058_RS15975 0.85 -0.3 794,034 + HMPREF1058_RS15975 0.86 -1.1 794,036 + HMPREF1058_RS15975 0.86 -1.4 794,037 - HMPREF1058_RS15975 0.86 +0.0 794,113 + -0.7 794,179 + +0.9 794,224 + -0.3 794,224 + +0.0 794,280 - -0.5 794,360 + HMPREF1058_RS15970 0.20 -0.1 794,363 + HMPREF1058_RS15970 0.20 +0.0 794,363 + HMPREF1058_RS15970 0.20 +0.2 794,427 + HMPREF1058_RS15970 0.35 +0.3 794,522 + HMPREF1058_RS15970 0.56 -0.2 794,596 + HMPREF1058_RS15970 0.72 +1.0 794,608 + HMPREF1058_RS15970 0.75 -0.1 794,608 + HMPREF1058_RS15970 0.75 -0.6 794,609 - HMPREF1058_RS15970 0.75 -0.3 794,626 - HMPREF1058_RS15970 0.79 -1.2 794,664 + HMPREF1058_RS15970 0.88 -0.5 794,664 + HMPREF1058_RS15970 0.88 +2.5 794,665 - HMPREF1058_RS15970 0.88 -0.7 794,964 - HMPREF1058_RS15965 0.22 -0.7 795,115 - HMPREF1058_RS15965 0.37 +0.4 795,119 + HMPREF1058_RS15965 0.37 +0.4
Or see this region's nucleotide sequence