Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15670 and HMPREF1058_RS15665 are separated by 46 nucleotides HMPREF1058_RS15665 and HMPREF1058_RS15660 are separated by 40 nucleotides
HMPREF1058_RS15670: HMPREF1058_RS15670 - galactose mutarotase, at 860,665 to 861,759
_RS15670
HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146
_RS15665
HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341
_RS15660
Position (kb) 861
862
863
864 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 860.816 kb on + strand, within HMPREF1058_RS15670 at 860.817 kb on - strand, within HMPREF1058_RS15670 at 860.817 kb on - strand at 860.821 kb on - strand, within HMPREF1058_RS15670 at 860.848 kb on + strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.874 kb on + strand, within HMPREF1058_RS15670 at 860.877 kb on + strand, within HMPREF1058_RS15670 at 860.878 kb on - strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.890 kb on - strand at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand at 860.991 kb on + strand, within HMPREF1058_RS15670 at 861.155 kb on + strand, within HMPREF1058_RS15670 at 861.159 kb on + strand, within HMPREF1058_RS15670 at 861.215 kb on + strand, within HMPREF1058_RS15670 at 861.216 kb on - strand, within HMPREF1058_RS15670 at 861.310 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.359 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.465 kb on - strand, within HMPREF1058_RS15670 at 861.544 kb on + strand, within HMPREF1058_RS15670 at 861.549 kb on + strand, within HMPREF1058_RS15670 at 861.571 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.574 kb on - strand, within HMPREF1058_RS15670 at 861.718 kb on + strand at 861.771 kb on - strand at 861.776 kb on - strand at 861.783 kb on - strand at 861.830 kb on - strand at 862.009 kb on + strand, within HMPREF1058_RS15665 at 862.059 kb on + strand, within HMPREF1058_RS15665 at 862.088 kb on - strand at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.112 kb on - strand, within HMPREF1058_RS15665 at 862.113 kb on + strand, within HMPREF1058_RS15665 at 862.114 kb on - strand, within HMPREF1058_RS15665 at 862.119 kb on + strand, within HMPREF1058_RS15665 at 862.136 kb on + strand, within HMPREF1058_RS15665 at 862.137 kb on - strand, within HMPREF1058_RS15665 at 862.156 kb on + strand, within HMPREF1058_RS15665 at 862.163 kb on + strand, within HMPREF1058_RS15665 at 862.197 kb on + strand, within HMPREF1058_RS15665 at 862.201 kb on + strand, within HMPREF1058_RS15665 at 862.374 kb on + strand, within HMPREF1058_RS15665 at 862.375 kb on - strand, within HMPREF1058_RS15665 at 862.516 kb on + strand at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.530 kb on + strand, within HMPREF1058_RS15665 at 862.548 kb on - strand, within HMPREF1058_RS15665 at 862.551 kb on + strand, within HMPREF1058_RS15665 at 862.552 kb on - strand, within HMPREF1058_RS15665 at 862.589 kb on + strand, within HMPREF1058_RS15665 at 862.655 kb on - strand, within HMPREF1058_RS15665 at 862.667 kb on + strand at 862.813 kb on + strand at 862.825 kb on + strand, within HMPREF1058_RS15665 at 863.048 kb on - strand at 863.096 kb on + strand at 863.096 kb on + strand at 863.151 kb on - strand at 863.163 kb on + strand at 863.164 kb on - strand at 863.177 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.199 kb on + strand at 863.199 kb on + strand at 863.203 kb on + strand at 863.249 kb on - strand at 863.251 kb on - strand at 863.271 kb on - strand at 863.277 kb on - strand at 863.326 kb on + strand, within HMPREF1058_RS15660 at 863.330 kb on + strand, within HMPREF1058_RS15660 at 863.336 kb on + strand, within HMPREF1058_RS15660 at 863.375 kb on - strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.408 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.553 kb on - strand, within HMPREF1058_RS15660 at 863.579 kb on + strand, within HMPREF1058_RS15660 at 863.580 kb on - strand, within HMPREF1058_RS15660 at 863.584 kb on - strand, within HMPREF1058_RS15660 at 863.648 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.681 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.930 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.994 kb on + strand, within HMPREF1058_RS15660 at 864.019 kb on + strand, within HMPREF1058_RS15660 at 864.065 kb on - strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 860,816 + HMPREF1058_RS15670 0.14 -2.4 860,817 - HMPREF1058_RS15670 0.14 -0.7 860,817 - -0.2 860,821 - HMPREF1058_RS15670 0.14 -0.9 860,848 + HMPREF1058_RS15670 0.17 -2.2 860,849 - HMPREF1058_RS15670 0.17 -0.0 860,849 - HMPREF1058_RS15670 0.17 +0.2 860,874 + HMPREF1058_RS15670 0.19 -3.0 860,877 + HMPREF1058_RS15670 0.19 -2.0 860,878 - HMPREF1058_RS15670 0.19 -1.0 860,879 + HMPREF1058_RS15670 0.20 -1.1 860,879 + HMPREF1058_RS15670 0.20 -2.4 860,890 - +2.0 860,980 + HMPREF1058_RS15670 0.29 -2.6 860,980 + HMPREF1058_RS15670 0.29 -0.6 860,980 + +0.2 860,991 + HMPREF1058_RS15670 0.30 +0.6 861,155 + HMPREF1058_RS15670 0.45 -0.8 861,159 + HMPREF1058_RS15670 0.45 -3.0 861,215 + HMPREF1058_RS15670 0.50 +0.2 861,216 - HMPREF1058_RS15670 0.50 -0.4 861,310 + HMPREF1058_RS15670 0.59 +0.6 861,329 + HMPREF1058_RS15670 0.61 +0.8 861,329 + HMPREF1058_RS15670 0.61 -0.0 861,359 + HMPREF1058_RS15670 0.63 -0.7 861,460 + HMPREF1058_RS15670 0.73 +0.6 861,460 + HMPREF1058_RS15670 0.73 +1.2 861,460 + HMPREF1058_RS15670 0.73 +1.5 861,465 - HMPREF1058_RS15670 0.73 +0.6 861,544 + HMPREF1058_RS15670 0.80 +0.6 861,549 + HMPREF1058_RS15670 0.81 -0.1 861,571 + HMPREF1058_RS15670 0.83 +1.2 861,573 + HMPREF1058_RS15670 0.83 +0.4 861,573 + HMPREF1058_RS15670 0.83 +3.0 861,574 - HMPREF1058_RS15670 0.83 -1.1 861,718 + +2.4 861,771 - -1.4 861,776 - -1.2 861,783 - +1.0 861,830 - -0.0 862,009 + HMPREF1058_RS15665 0.15 -1.5 862,059 + HMPREF1058_RS15665 0.19 -1.3 862,088 - -0.7 862,111 + HMPREF1058_RS15665 0.23 -0.4 862,111 + HMPREF1058_RS15665 0.23 -1.3 862,112 - HMPREF1058_RS15665 0.23 -0.7 862,113 + HMPREF1058_RS15665 0.23 -2.1 862,114 - HMPREF1058_RS15665 0.23 -0.8 862,119 + HMPREF1058_RS15665 0.23 -0.6 862,136 + HMPREF1058_RS15665 0.25 -1.1 862,137 - HMPREF1058_RS15665 0.25 +0.2 862,156 + HMPREF1058_RS15665 0.26 -1.5 862,163 + HMPREF1058_RS15665 0.27 -1.2 862,197 + HMPREF1058_RS15665 0.29 -2.3 862,201 + HMPREF1058_RS15665 0.29 -0.8 862,374 + HMPREF1058_RS15665 0.42 -1.5 862,375 - HMPREF1058_RS15665 0.42 -3.9 862,516 + -0.4 862,524 + HMPREF1058_RS15665 0.54 -0.0 862,524 + HMPREF1058_RS15665 0.54 -1.8 862,530 + HMPREF1058_RS15665 0.54 -1.8 862,548 - HMPREF1058_RS15665 0.55 -1.0 862,551 + HMPREF1058_RS15665 0.56 -1.1 862,552 - HMPREF1058_RS15665 0.56 +3.0 862,589 + HMPREF1058_RS15665 0.58 -0.8 862,655 - HMPREF1058_RS15665 0.63 -0.6 862,667 + +1.4 862,813 + +0.6 862,825 + HMPREF1058_RS15665 0.76 -2.2 863,048 - +0.1 863,096 + +0.2 863,096 + -1.9 863,151 - -1.7 863,163 + -2.1 863,164 - -1.5 863,177 + -1.1 863,194 + -3.5 863,194 + -0.7 863,194 + -1.7 863,195 - -4.0 863,195 - -1.4 863,195 - -1.7 863,199 + -0.5 863,199 + -1.1 863,203 + -2.8 863,249 - -1.8 863,251 - -3.6 863,271 - -2.5 863,277 - -1.9 863,326 + HMPREF1058_RS15660 0.12 -0.9 863,330 + HMPREF1058_RS15660 0.12 -3.3 863,336 + HMPREF1058_RS15660 0.13 -2.9 863,375 - HMPREF1058_RS15660 0.16 -0.5 863,407 + HMPREF1058_RS15660 0.19 -4.0 863,407 + HMPREF1058_RS15660 0.19 -2.7 863,407 + HMPREF1058_RS15660 0.19 -3.4 863,408 - HMPREF1058_RS15660 0.19 -1.9 863,460 - HMPREF1058_RS15660 0.24 -0.8 863,460 - HMPREF1058_RS15660 0.24 -1.6 863,553 - HMPREF1058_RS15660 0.32 -3.1 863,579 + HMPREF1058_RS15660 0.34 -2.2 863,580 - HMPREF1058_RS15660 0.34 -2.2 863,584 - HMPREF1058_RS15660 0.34 -3.1 863,648 - HMPREF1058_RS15660 0.40 -1.8 863,671 - HMPREF1058_RS15660 0.42 -2.3 863,671 - HMPREF1058_RS15660 0.42 -0.3 863,681 - HMPREF1058_RS15660 0.43 -2.5 863,770 - HMPREF1058_RS15660 0.50 -1.5 863,770 - HMPREF1058_RS15660 0.50 -1.7 863,930 + HMPREF1058_RS15660 0.64 -3.4 863,979 + HMPREF1058_RS15660 0.69 -2.1 863,979 + HMPREF1058_RS15660 0.69 -0.1 863,981 + HMPREF1058_RS15660 0.69 -1.6 863,981 + HMPREF1058_RS15660 0.69 -2.6 863,994 + HMPREF1058_RS15660 0.70 -4.1 864,019 + HMPREF1058_RS15660 0.72 -2.7 864,065 - HMPREF1058_RS15660 0.76 -4.4 864,115 + HMPREF1058_RS15660 0.80 -4.1 864,115 + HMPREF1058_RS15660 0.80 -3.4
Or see this region's nucleotide sequence