Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15660 and HMPREF1058_RS15655 are separated by 196 nucleotides HMPREF1058_RS15655 and HMPREF1058_RS15650 are separated by 26 nucleotides
HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341
_RS15660
HMPREF1058_RS15655: HMPREF1058_RS15655 - galactose mutarotase, at 864,538 to 865,692
_RS15655
HMPREF1058_RS15650: HMPREF1058_RS15650 - sodium:solute symporter, at 865,719 to 867,461
_RS15650
Position (kb) 864
865
866 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 863.553 kb on - strand, within HMPREF1058_RS15660 at 863.579 kb on + strand, within HMPREF1058_RS15660 at 863.580 kb on - strand, within HMPREF1058_RS15660 at 863.584 kb on - strand, within HMPREF1058_RS15660 at 863.648 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.681 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.930 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.994 kb on + strand, within HMPREF1058_RS15660 at 864.019 kb on + strand, within HMPREF1058_RS15660 at 864.065 kb on - strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.232 kb on + strand at 864.308 kb on - strand at 864.337 kb on + strand at 864.365 kb on + strand at 864.451 kb on + strand at 864.451 kb on + strand at 864.508 kb on + strand at 864.517 kb on - strand at 864.532 kb on + strand at 864.534 kb on + strand at 864.652 kb on - strand at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.750 kb on + strand, within HMPREF1058_RS15655 at 864.756 kb on - strand, within HMPREF1058_RS15655 at 864.760 kb on - strand, within HMPREF1058_RS15655 at 864.789 kb on - strand, within HMPREF1058_RS15655 at 864.798 kb on - strand, within HMPREF1058_RS15655 at 864.885 kb on + strand, within HMPREF1058_RS15655 at 864.885 kb on + strand, within HMPREF1058_RS15655 at 864.886 kb on - strand, within HMPREF1058_RS15655 at 864.963 kb on + strand, within HMPREF1058_RS15655 at 865.012 kb on - strand, within HMPREF1058_RS15655 at 865.015 kb on - strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.085 kb on - strand, within HMPREF1058_RS15655 at 865.085 kb on - strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.473 kb on - strand, within HMPREF1058_RS15655 at 865.479 kb on + strand, within HMPREF1058_RS15655 at 865.480 kb on - strand, within HMPREF1058_RS15655 at 865.548 kb on + strand, within HMPREF1058_RS15655 at 865.548 kb on + strand, within HMPREF1058_RS15655 at 865.549 kb on - strand, within HMPREF1058_RS15655 at 865.628 kb on + strand at 865.651 kb on + strand at 865.652 kb on - strand at 865.652 kb on - strand at 865.665 kb on + strand at 865.665 kb on + strand at 865.666 kb on - strand at 865.704 kb on + strand at 865.709 kb on - strand at 865.716 kb on - strand at 865.762 kb on + strand at 865.780 kb on + strand at 865.781 kb on - strand at 866.034 kb on + strand, within HMPREF1058_RS15650 at 866.044 kb on + strand, within HMPREF1058_RS15650 at 866.099 kb on + strand, within HMPREF1058_RS15650 at 866.145 kb on + strand, within HMPREF1058_RS15650 at 866.146 kb on - strand, within HMPREF1058_RS15650 at 866.176 kb on - strand, within HMPREF1058_RS15650 at 866.203 kb on + strand, within HMPREF1058_RS15650 at 866.241 kb on - strand, within HMPREF1058_RS15650 at 866.376 kb on - strand, within HMPREF1058_RS15650 at 866.378 kb on + strand, within HMPREF1058_RS15650 at 866.378 kb on + strand, within HMPREF1058_RS15650 at 866.379 kb on - strand, within HMPREF1058_RS15650 at 866.466 kb on - strand, within HMPREF1058_RS15650 at 866.497 kb on - strand, within HMPREF1058_RS15650 at 866.645 kb on + strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 863,553 - HMPREF1058_RS15660 0.32 -3.1 863,579 + HMPREF1058_RS15660 0.34 -2.2 863,580 - HMPREF1058_RS15660 0.34 -2.2 863,584 - HMPREF1058_RS15660 0.34 -3.1 863,648 - HMPREF1058_RS15660 0.40 -1.8 863,671 - HMPREF1058_RS15660 0.42 -2.3 863,671 - HMPREF1058_RS15660 0.42 -0.3 863,681 - HMPREF1058_RS15660 0.43 -2.5 863,770 - HMPREF1058_RS15660 0.50 -1.5 863,770 - HMPREF1058_RS15660 0.50 -1.7 863,930 + HMPREF1058_RS15660 0.64 -3.4 863,979 + HMPREF1058_RS15660 0.69 -2.1 863,979 + HMPREF1058_RS15660 0.69 -0.1 863,981 + HMPREF1058_RS15660 0.69 -1.6 863,981 + HMPREF1058_RS15660 0.69 -2.6 863,994 + HMPREF1058_RS15660 0.70 -4.1 864,019 + HMPREF1058_RS15660 0.72 -2.7 864,065 - HMPREF1058_RS15660 0.76 -4.4 864,115 + HMPREF1058_RS15660 0.80 -4.1 864,115 + HMPREF1058_RS15660 0.80 -3.4 864,232 + +0.5 864,308 - -4.0 864,337 + -1.1 864,365 + -0.6 864,451 + +1.2 864,451 + -1.1 864,508 + -0.2 864,517 - -0.1 864,532 + -1.5 864,534 + -0.8 864,652 - +0.3 864,725 + HMPREF1058_RS15655 0.16 -0.6 864,725 + HMPREF1058_RS15655 0.16 -0.8 864,725 + HMPREF1058_RS15655 0.16 -0.8 864,750 + HMPREF1058_RS15655 0.18 +0.9 864,756 - HMPREF1058_RS15655 0.19 -0.1 864,760 - HMPREF1058_RS15655 0.19 +0.0 864,789 - HMPREF1058_RS15655 0.22 -0.9 864,798 - HMPREF1058_RS15655 0.23 +0.6 864,885 + HMPREF1058_RS15655 0.30 +1.4 864,885 + HMPREF1058_RS15655 0.30 -0.9 864,886 - HMPREF1058_RS15655 0.30 -1.7 864,963 + HMPREF1058_RS15655 0.37 +0.0 865,012 - HMPREF1058_RS15655 0.41 -0.1 865,015 - HMPREF1058_RS15655 0.41 +0.6 865,084 + HMPREF1058_RS15655 0.47 -1.1 865,084 + HMPREF1058_RS15655 0.47 -0.3 865,084 + HMPREF1058_RS15655 0.47 -2.1 865,084 + HMPREF1058_RS15655 0.47 +0.3 865,084 + HMPREF1058_RS15655 0.47 +0.9 865,085 - HMPREF1058_RS15655 0.47 -0.1 865,085 - HMPREF1058_RS15655 0.47 -0.5 865,472 + HMPREF1058_RS15655 0.81 -0.9 865,472 + HMPREF1058_RS15655 0.81 -0.5 865,472 + HMPREF1058_RS15655 0.81 -1.2 865,472 + HMPREF1058_RS15655 0.81 +1.0 865,473 - HMPREF1058_RS15655 0.81 -1.9 865,479 + HMPREF1058_RS15655 0.81 -0.2 865,480 - HMPREF1058_RS15655 0.82 -1.6 865,548 + HMPREF1058_RS15655 0.87 +0.6 865,548 + HMPREF1058_RS15655 0.87 -1.3 865,549 - HMPREF1058_RS15655 0.88 -0.3 865,628 + -0.2 865,651 + -0.9 865,652 - +0.1 865,652 - -0.6 865,665 + -1.1 865,665 + -0.7 865,666 - -0.7 865,704 + +1.1 865,709 - -1.1 865,716 - +0.5 865,762 + +0.1 865,780 + -1.8 865,781 - -0.0 866,034 + HMPREF1058_RS15650 0.18 -0.8 866,044 + HMPREF1058_RS15650 0.19 -0.1 866,099 + HMPREF1058_RS15650 0.22 -0.0 866,145 + HMPREF1058_RS15650 0.24 +0.2 866,146 - HMPREF1058_RS15650 0.24 +0.9 866,176 - HMPREF1058_RS15650 0.26 +1.3 866,203 + HMPREF1058_RS15650 0.28 +2.0 866,241 - HMPREF1058_RS15650 0.30 +0.2 866,376 - HMPREF1058_RS15650 0.38 -0.4 866,378 + HMPREF1058_RS15650 0.38 +1.0 866,378 + HMPREF1058_RS15650 0.38 -0.3 866,379 - HMPREF1058_RS15650 0.38 -0.3 866,466 - HMPREF1058_RS15650 0.43 -0.3 866,497 - HMPREF1058_RS15650 0.45 +1.4 866,645 + HMPREF1058_RS15650 0.53 +0.3 866,646 - HMPREF1058_RS15650 0.53 +0.3 866,646 - HMPREF1058_RS15650 0.53 -1.2
Or see this region's nucleotide sequence