Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15165 and HMPREF1058_RS15160 are separated by 5 nucleotides HMPREF1058_RS15160 and HMPREF1058_RS15155 are separated by 613 nucleotides
HMPREF1058_RS15165: HMPREF1058_RS15165 - galactose mutarotase, at 991,717 to 992,850
_RS15165
HMPREF1058_RS15160: HMPREF1058_RS15160 - beta-galactosidase, at 992,856 to 994,670
_RS15160
HMPREF1058_RS15155: HMPREF1058_RS15155 - AhpC/TSA family protein, at 995,284 to 996,462
_RS15155
Position (kb) 992
993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 991.857 kb on - strand, within HMPREF1058_RS15165 at 991.858 kb on + strand, within HMPREF1058_RS15165 at 991.864 kb on - strand, within HMPREF1058_RS15165 at 991.935 kb on - strand, within HMPREF1058_RS15165 at 991.946 kb on - strand, within HMPREF1058_RS15165 at 992.044 kb on + strand, within HMPREF1058_RS15165 at 992.168 kb on + strand, within HMPREF1058_RS15165 at 992.192 kb on + strand, within HMPREF1058_RS15165 at 992.193 kb on - strand, within HMPREF1058_RS15165 at 992.202 kb on + strand, within HMPREF1058_RS15165 at 992.235 kb on - strand, within HMPREF1058_RS15165 at 992.293 kb on - strand, within HMPREF1058_RS15165 at 992.332 kb on - strand, within HMPREF1058_RS15165 at 992.379 kb on - strand, within HMPREF1058_RS15165 at 992.413 kb on - strand, within HMPREF1058_RS15165 at 992.424 kb on + strand, within HMPREF1058_RS15165 at 992.468 kb on + strand, within HMPREF1058_RS15165 at 992.468 kb on + strand, within HMPREF1058_RS15165 at 992.468 kb on + strand, within HMPREF1058_RS15165 at 992.490 kb on - strand, within HMPREF1058_RS15165 at 992.490 kb on - strand, within HMPREF1058_RS15165 at 992.491 kb on + strand, within HMPREF1058_RS15165 at 992.492 kb on - strand, within HMPREF1058_RS15165 at 992.525 kb on - strand, within HMPREF1058_RS15165 at 992.526 kb on + strand, within HMPREF1058_RS15165 at 992.547 kb on + strand, within HMPREF1058_RS15165 at 992.577 kb on + strand, within HMPREF1058_RS15165 at 992.579 kb on + strand, within HMPREF1058_RS15165 at 992.580 kb on - strand, within HMPREF1058_RS15165 at 992.608 kb on + strand, within HMPREF1058_RS15165 at 992.608 kb on + strand, within HMPREF1058_RS15165 at 992.656 kb on - strand, within HMPREF1058_RS15165 at 992.666 kb on + strand, within HMPREF1058_RS15165 at 992.667 kb on - strand, within HMPREF1058_RS15165 at 992.676 kb on + strand, within HMPREF1058_RS15165 at 992.691 kb on + strand, within HMPREF1058_RS15165 at 992.691 kb on + strand, within HMPREF1058_RS15165 at 992.708 kb on - strand, within HMPREF1058_RS15165 at 992.734 kb on + strand, within HMPREF1058_RS15165 at 992.828 kb on - strand at 992.845 kb on - strand at 992.871 kb on - strand at 992.981 kb on - strand at 993.029 kb on + strand at 993.030 kb on - strand at 993.037 kb on - strand at 993.075 kb on + strand, within HMPREF1058_RS15160 at 993.075 kb on + strand, within HMPREF1058_RS15160 at 993.076 kb on - strand, within HMPREF1058_RS15160 at 993.173 kb on - strand, within HMPREF1058_RS15160 at 993.173 kb on - strand, within HMPREF1058_RS15160 at 993.178 kb on + strand, within HMPREF1058_RS15160 at 993.201 kb on - strand, within HMPREF1058_RS15160 at 993.227 kb on + strand, within HMPREF1058_RS15160 at 993.228 kb on - strand, within HMPREF1058_RS15160 at 993.230 kb on - strand, within HMPREF1058_RS15160 at 993.274 kb on + strand, within HMPREF1058_RS15160 at 993.506 kb on + strand, within HMPREF1058_RS15160 at 993.610 kb on - strand, within HMPREF1058_RS15160 at 993.863 kb on + strand, within HMPREF1058_RS15160 at 993.863 kb on + strand, within HMPREF1058_RS15160 at 993.864 kb on - strand, within HMPREF1058_RS15160 at 993.864 kb on - strand, within HMPREF1058_RS15160 at 993.867 kb on + strand, within HMPREF1058_RS15160 at 993.868 kb on - strand, within HMPREF1058_RS15160 at 993.926 kb on - strand, within HMPREF1058_RS15160 at 993.928 kb on - strand, within HMPREF1058_RS15160 at 993.988 kb on - strand, within HMPREF1058_RS15160 at 994.086 kb on - strand, within HMPREF1058_RS15160 at 994.125 kb on - strand, within HMPREF1058_RS15160 at 994.268 kb on + strand, within HMPREF1058_RS15160 at 994.352 kb on - strand, within HMPREF1058_RS15160 at 994.357 kb on - strand, within HMPREF1058_RS15160 at 994.557 kb on - strand at 994.557 kb on - strand at 994.560 kb on + strand at 994.670 kb on + strand at 994.709 kb on + strand at 994.797 kb on + strand at 994.814 kb on - strand at 994.814 kb on - strand at 994.818 kb on - strand at 994.819 kb on + strand at 994.819 kb on + strand at 994.825 kb on + strand at 994.826 kb on - strand at 994.826 kb on - strand at 994.852 kb on + strand at 994.887 kb on + strand at 994.899 kb on + strand at 994.978 kb on + strand at 994.984 kb on - strand at 994.999 kb on - strand at 995.011 kb on + strand at 995.017 kb on - strand at 995.021 kb on - strand at 995.025 kb on + strand at 995.026 kb on - strand at 995.049 kb on + strand at 995.050 kb on - strand at 995.052 kb on - strand at 995.261 kb on + strand at 995.316 kb on + strand at 995.321 kb on + strand at 995.322 kb on - strand at 995.358 kb on + strand at 995.382 kb on + strand at 995.400 kb on + strand at 995.401 kb on - strand at 995.401 kb on - strand at 995.512 kb on - strand, within HMPREF1058_RS15155 at 995.522 kb on + strand, within HMPREF1058_RS15155 at 995.523 kb on - strand, within HMPREF1058_RS15155 at 995.523 kb on - strand, within HMPREF1058_RS15155 at 995.526 kb on + strand, within HMPREF1058_RS15155 at 995.595 kb on + strand, within HMPREF1058_RS15155 at 995.627 kb on + strand, within HMPREF1058_RS15155 at 995.628 kb on - strand, within HMPREF1058_RS15155
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 991,857 - HMPREF1058_RS15165 0.12 +0.8 991,858 + HMPREF1058_RS15165 0.12 -1.4 991,864 - HMPREF1058_RS15165 0.13 -0.7 991,935 - HMPREF1058_RS15165 0.19 +0.2 991,946 - HMPREF1058_RS15165 0.20 +0.5 992,044 + HMPREF1058_RS15165 0.29 +0.7 992,168 + HMPREF1058_RS15165 0.40 -0.5 992,192 + HMPREF1058_RS15165 0.42 +0.2 992,193 - HMPREF1058_RS15165 0.42 +0.6 992,202 + HMPREF1058_RS15165 0.43 -0.6 992,235 - HMPREF1058_RS15165 0.46 -0.7 992,293 - HMPREF1058_RS15165 0.51 -0.6 992,332 - HMPREF1058_RS15165 0.54 +1.4 992,379 - HMPREF1058_RS15165 0.58 +1.6 992,413 - HMPREF1058_RS15165 0.61 +0.8 992,424 + HMPREF1058_RS15165 0.62 -0.6 992,468 + HMPREF1058_RS15165 0.66 +0.2 992,468 + HMPREF1058_RS15165 0.66 -0.8 992,468 + HMPREF1058_RS15165 0.66 +2.2 992,490 - HMPREF1058_RS15165 0.68 -0.7 992,490 - HMPREF1058_RS15165 0.68 +0.2 992,491 + HMPREF1058_RS15165 0.68 -0.3 992,492 - HMPREF1058_RS15165 0.68 -0.5 992,525 - HMPREF1058_RS15165 0.71 -0.1 992,526 + HMPREF1058_RS15165 0.71 -0.5 992,547 + HMPREF1058_RS15165 0.73 -1.5 992,577 + HMPREF1058_RS15165 0.76 -0.4 992,579 + HMPREF1058_RS15165 0.76 -0.3 992,580 - HMPREF1058_RS15165 0.76 -0.0 992,608 + HMPREF1058_RS15165 0.79 -0.5 992,608 + HMPREF1058_RS15165 0.79 +0.8 992,656 - HMPREF1058_RS15165 0.83 -0.9 992,666 + HMPREF1058_RS15165 0.84 -0.1 992,667 - HMPREF1058_RS15165 0.84 -0.6 992,676 + HMPREF1058_RS15165 0.85 -0.4 992,691 + HMPREF1058_RS15165 0.86 -0.1 992,691 + HMPREF1058_RS15165 0.86 +0.8 992,708 - HMPREF1058_RS15165 0.87 -0.5 992,734 + HMPREF1058_RS15165 0.90 -0.4 992,828 - +1.2 992,845 - +1.9 992,871 - +0.8 992,981 - -0.4 993,029 + +1.0 993,030 - +0.5 993,037 - -2.2 993,075 + HMPREF1058_RS15160 0.12 +0.3 993,075 + HMPREF1058_RS15160 0.12 +0.2 993,076 - HMPREF1058_RS15160 0.12 +1.0 993,173 - HMPREF1058_RS15160 0.17 +0.4 993,173 - HMPREF1058_RS15160 0.17 -0.3 993,178 + HMPREF1058_RS15160 0.18 -0.3 993,201 - HMPREF1058_RS15160 0.19 -0.0 993,227 + HMPREF1058_RS15160 0.20 -1.1 993,228 - HMPREF1058_RS15160 0.20 +1.2 993,230 - HMPREF1058_RS15160 0.21 +0.2 993,274 + HMPREF1058_RS15160 0.23 +0.9 993,506 + HMPREF1058_RS15160 0.36 +0.2 993,610 - HMPREF1058_RS15160 0.42 +0.4 993,863 + HMPREF1058_RS15160 0.55 +0.6 993,863 + HMPREF1058_RS15160 0.55 +0.4 993,864 - HMPREF1058_RS15160 0.56 +0.4 993,864 - HMPREF1058_RS15160 0.56 +0.5 993,867 + HMPREF1058_RS15160 0.56 -0.3 993,868 - HMPREF1058_RS15160 0.56 -0.4 993,926 - HMPREF1058_RS15160 0.59 -0.2 993,928 - HMPREF1058_RS15160 0.59 -3.7 993,988 - HMPREF1058_RS15160 0.62 +1.9 994,086 - HMPREF1058_RS15160 0.68 -1.2 994,125 - HMPREF1058_RS15160 0.70 -0.4 994,268 + HMPREF1058_RS15160 0.78 +0.6 994,352 - HMPREF1058_RS15160 0.82 -0.3 994,357 - HMPREF1058_RS15160 0.83 -1.6 994,557 - -0.7 994,557 - -0.9 994,560 + +0.3 994,670 + -0.9 994,709 + -1.7 994,797 + +0.1 994,814 - +1.6 994,814 - +0.1 994,818 - +0.1 994,819 + +0.2 994,819 + +0.7 994,825 + +0.7 994,826 - +3.5 994,826 - -0.2 994,852 + +0.4 994,887 + -1.0 994,899 + +0.1 994,978 + -0.3 994,984 - -0.1 994,999 - +0.4 995,011 + +0.1 995,017 - +0.4 995,021 - +0.9 995,025 + +0.9 995,026 - +0.5 995,049 + +0.3 995,050 - +0.5 995,052 - +0.4 995,261 + +0.3 995,316 + +0.2 995,321 + -0.3 995,322 - -1.4 995,358 + -1.1 995,382 + -0.2 995,400 + -1.3 995,401 - +0.4 995,401 - -1.1 995,512 - HMPREF1058_RS15155 0.19 +0.2 995,522 + HMPREF1058_RS15155 0.20 -0.1 995,523 - HMPREF1058_RS15155 0.20 -0.1 995,523 - HMPREF1058_RS15155 0.20 +0.4 995,526 + HMPREF1058_RS15155 0.21 +0.5 995,595 + HMPREF1058_RS15155 0.26 -0.4 995,627 + HMPREF1058_RS15155 0.29 -0.1 995,628 - HMPREF1058_RS15155 0.29 -1.2
Or see this region's nucleotide sequence