Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12245 and HMPREF1058_RS12240 overlap by 4 nucleotides HMPREF1058_RS12240 and HMPREF1058_RS12235 are separated by 13 nucleotides HMPREF1058_RS12235 and HMPREF1058_RS12230 are separated by 17 nucleotides
HMPREF1058_RS12245: HMPREF1058_RS12245 - LysO family transporter, at 165,866 to 166,147
_RS12245
HMPREF1058_RS12240: HMPREF1058_RS12240 - lysine exporter LysO family protein, at 166,144 to 166,746
_RS12240
HMPREF1058_RS12235: HMPREF1058_RS12235 - DUF4981 domain-containing protein, at 166,760 to 169,936
_RS12235
HMPREF1058_RS12230: HMPREF1058_RS12230 - glycoside hydrolase, at 169,954 to 171,888
_RS12230
Position (kb) 166
167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.773 kb on + strand at 165.774 kb on - strand at 165.776 kb on - strand at 165.776 kb on - strand at 165.779 kb on + strand at 165.780 kb on - strand at 165.819 kb on + strand at 165.835 kb on + strand at 165.847 kb on + strand at 165.852 kb on - strand at 165.861 kb on + strand at 165.862 kb on - strand at 165.864 kb on - strand at 165.865 kb on + strand at 165.866 kb on - strand at 165.866 kb on - strand at 165.976 kb on - strand, within HMPREF1058_RS12245 at 165.993 kb on + strand, within HMPREF1058_RS12245 at 165.994 kb on - strand, within HMPREF1058_RS12245 at 165.994 kb on - strand, within HMPREF1058_RS12245 at 166.036 kb on + strand, within HMPREF1058_RS12245 at 166.110 kb on - strand, within HMPREF1058_RS12245 at 166.110 kb on - strand, within HMPREF1058_RS12245 at 166.114 kb on - strand, within HMPREF1058_RS12245 at 166.114 kb on - strand, within HMPREF1058_RS12245 at 166.143 kb on + strand at 166.143 kb on + strand at 166.144 kb on - strand at 166.246 kb on + strand, within HMPREF1058_RS12240 at 166.429 kb on - strand, within HMPREF1058_RS12240 at 166.486 kb on + strand, within HMPREF1058_RS12240 at 166.486 kb on + strand, within HMPREF1058_RS12240 at 166.488 kb on + strand, within HMPREF1058_RS12240 at 166.712 kb on + strand at 166.741 kb on - strand at 166.741 kb on - strand at 166.777 kb on + strand at 166.787 kb on - strand at 166.893 kb on - strand at 167.045 kb on - strand at 167.080 kb on + strand, within HMPREF1058_RS12235 at 167.080 kb on - strand, within HMPREF1058_RS12235 at 167.126 kb on + strand, within HMPREF1058_RS12235 at 167.127 kb on - strand, within HMPREF1058_RS12235 at 167.137 kb on - strand, within HMPREF1058_RS12235 at 167.137 kb on - strand, within HMPREF1058_RS12235 at 167.198 kb on + strand, within HMPREF1058_RS12235 at 167.198 kb on + strand, within HMPREF1058_RS12235 at 167.199 kb on - strand, within HMPREF1058_RS12235 at 167.199 kb on - strand, within HMPREF1058_RS12235 at 167.199 kb on - strand, within HMPREF1058_RS12235 at 167.348 kb on - strand, within HMPREF1058_RS12235 at 167.414 kb on + strand, within HMPREF1058_RS12235 at 167.463 kb on + strand, within HMPREF1058_RS12235 at 167.463 kb on + strand, within HMPREF1058_RS12235 at 167.464 kb on - strand, within HMPREF1058_RS12235 at 167.464 kb on - strand, within HMPREF1058_RS12235 at 167.622 kb on + strand, within HMPREF1058_RS12235 at 167.647 kb on - strand, within HMPREF1058_RS12235 at 167.922 kb on + strand, within HMPREF1058_RS12235 at 167.999 kb on + strand, within HMPREF1058_RS12235 at 168.027 kb on - strand, within HMPREF1058_RS12235 at 168.073 kb on + strand, within HMPREF1058_RS12235 at 168.222 kb on + strand, within HMPREF1058_RS12235 at 168.266 kb on + strand, within HMPREF1058_RS12235 at 168.302 kb on + strand, within HMPREF1058_RS12235 at 168.302 kb on + strand, within HMPREF1058_RS12235 at 168.315 kb on - strand, within HMPREF1058_RS12235 at 168.315 kb on - strand, within HMPREF1058_RS12235 at 168.408 kb on + strand, within HMPREF1058_RS12235 at 168.409 kb on - strand, within HMPREF1058_RS12235 at 168.446 kb on + strand, within HMPREF1058_RS12235 at 168.447 kb on - strand, within HMPREF1058_RS12235 at 168.472 kb on - strand, within HMPREF1058_RS12235 at 168.645 kb on + strand, within HMPREF1058_RS12235 at 168.645 kb on + strand, within HMPREF1058_RS12235 at 168.655 kb on + strand, within HMPREF1058_RS12235 at 168.734 kb on + strand, within HMPREF1058_RS12235 at 168.861 kb on + strand, within HMPREF1058_RS12235 at 168.869 kb on + strand, within HMPREF1058_RS12235 at 168.912 kb on + strand, within HMPREF1058_RS12235 at 168.934 kb on - strand, within HMPREF1058_RS12235 at 169.005 kb on + strand, within HMPREF1058_RS12235 at 169.048 kb on + strand, within HMPREF1058_RS12235 at 169.085 kb on - strand, within HMPREF1058_RS12235 at 169.113 kb on + strand, within HMPREF1058_RS12235 at 169.113 kb on + strand, within HMPREF1058_RS12235 at 169.115 kb on + strand, within HMPREF1058_RS12235 at 169.116 kb on - strand, within HMPREF1058_RS12235 at 169.116 kb on - strand, within HMPREF1058_RS12235 at 169.299 kb on + strand, within HMPREF1058_RS12235 at 169.300 kb on - strand, within HMPREF1058_RS12235 at 169.375 kb on - strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.430 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.455 kb on - strand, within HMPREF1058_RS12235 at 169.533 kb on - strand, within HMPREF1058_RS12235 at 169.564 kb on + strand, within HMPREF1058_RS12235 at 169.565 kb on + strand, within HMPREF1058_RS12235 at 169.603 kb on - strand, within HMPREF1058_RS12235 at 169.707 kb on - strand at 169.807 kb on + strand at 169.808 kb on - strand at 169.810 kb on + strand at 169.827 kb on + strand at 169.827 kb on + strand at 169.935 kb on - strand at 169.995 kb on - strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.082 kb on - strand at 170.082 kb on - strand at 170.086 kb on + strand at 170.086 kb on + strand at 170.087 kb on - strand at 170.087 kb on - strand at 170.250 kb on - strand, within HMPREF1058_RS12230 at 170.255 kb on - strand, within HMPREF1058_RS12230 at 170.276 kb on + strand, within HMPREF1058_RS12230 at 170.316 kb on - strand, within HMPREF1058_RS12230 at 170.318 kb on - strand, within HMPREF1058_RS12230 at 170.454 kb on - strand, within HMPREF1058_RS12230 at 170.454 kb on - strand, within HMPREF1058_RS12230 at 170.517 kb on - strand, within HMPREF1058_RS12230 at 170.615 kb on - strand, within HMPREF1058_RS12230 at 170.717 kb on - strand, within HMPREF1058_RS12230 at 170.790 kb on + strand, within HMPREF1058_RS12230 at 170.791 kb on - strand, within HMPREF1058_RS12230 at 170.860 kb on + strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.868 kb on - strand, within HMPREF1058_RS12230
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 165,773 + -0.4 165,774 - +0.1 165,776 - -1.4 165,776 - +0.4 165,779 + +0.2 165,780 - -0.7 165,819 + +1.0 165,835 + +0.3 165,847 + -1.0 165,852 - +0.9 165,861 + +0.5 165,862 - +0.1 165,864 - -0.3 165,865 + -0.5 165,866 - -0.1 165,866 - -0.3 165,976 - HMPREF1058_RS12245 0.39 +0.2 165,993 + HMPREF1058_RS12245 0.45 -0.0 165,994 - HMPREF1058_RS12245 0.45 -0.8 165,994 - HMPREF1058_RS12245 0.45 +0.1 166,036 + HMPREF1058_RS12245 0.60 -0.2 166,110 - HMPREF1058_RS12245 0.87 +0.8 166,110 - HMPREF1058_RS12245 0.87 -0.5 166,114 - HMPREF1058_RS12245 0.88 -0.1 166,114 - HMPREF1058_RS12245 0.88 +0.4 166,143 + -0.4 166,143 + -0.0 166,144 - -0.2 166,246 + HMPREF1058_RS12240 0.17 +0.2 166,429 - HMPREF1058_RS12240 0.47 -0.1 166,486 + HMPREF1058_RS12240 0.57 +0.0 166,486 + HMPREF1058_RS12240 0.57 +0.1 166,488 + HMPREF1058_RS12240 0.57 +0.8 166,712 + +0.2 166,741 - -1.0 166,741 - -0.1 166,777 + -0.2 166,787 - -0.2 166,893 - -0.3 167,045 - -0.2 167,080 + HMPREF1058_RS12235 0.10 -2.3 167,080 - HMPREF1058_RS12235 0.10 +0.0 167,126 + HMPREF1058_RS12235 0.12 -1.7 167,127 - HMPREF1058_RS12235 0.12 +0.3 167,137 - HMPREF1058_RS12235 0.12 +0.4 167,137 - HMPREF1058_RS12235 0.12 -0.7 167,198 + HMPREF1058_RS12235 0.14 -0.3 167,198 + HMPREF1058_RS12235 0.14 +1.2 167,199 - HMPREF1058_RS12235 0.14 +1.0 167,199 - HMPREF1058_RS12235 0.14 -0.2 167,199 - HMPREF1058_RS12235 0.14 -0.1 167,348 - HMPREF1058_RS12235 0.19 -1.1 167,414 + HMPREF1058_RS12235 0.21 +0.4 167,463 + HMPREF1058_RS12235 0.22 -2.4 167,463 + HMPREF1058_RS12235 0.22 +0.2 167,464 - HMPREF1058_RS12235 0.22 -0.5 167,464 - HMPREF1058_RS12235 0.22 -0.0 167,622 + HMPREF1058_RS12235 0.27 -1.2 167,647 - HMPREF1058_RS12235 0.28 -0.2 167,922 + HMPREF1058_RS12235 0.37 -0.2 167,999 + HMPREF1058_RS12235 0.39 +1.1 168,027 - HMPREF1058_RS12235 0.40 -0.9 168,073 + HMPREF1058_RS12235 0.41 -0.2 168,222 + HMPREF1058_RS12235 0.46 +0.2 168,266 + HMPREF1058_RS12235 0.47 -0.0 168,302 + HMPREF1058_RS12235 0.49 +0.3 168,302 + HMPREF1058_RS12235 0.49 +0.1 168,315 - HMPREF1058_RS12235 0.49 -0.7 168,315 - HMPREF1058_RS12235 0.49 +0.2 168,408 + HMPREF1058_RS12235 0.52 -0.3 168,409 - HMPREF1058_RS12235 0.52 -0.6 168,446 + HMPREF1058_RS12235 0.53 -0.5 168,447 - HMPREF1058_RS12235 0.53 -0.2 168,472 - HMPREF1058_RS12235 0.54 -0.0 168,645 + HMPREF1058_RS12235 0.59 +0.2 168,645 + HMPREF1058_RS12235 0.59 -0.3 168,655 + HMPREF1058_RS12235 0.60 -1.4 168,734 + HMPREF1058_RS12235 0.62 -0.2 168,861 + HMPREF1058_RS12235 0.66 -0.6 168,869 + HMPREF1058_RS12235 0.66 -0.2 168,912 + HMPREF1058_RS12235 0.68 +0.9 168,934 - HMPREF1058_RS12235 0.68 +0.7 169,005 + HMPREF1058_RS12235 0.71 -0.0 169,048 + HMPREF1058_RS12235 0.72 +0.4 169,085 - HMPREF1058_RS12235 0.73 +0.0 169,113 + HMPREF1058_RS12235 0.74 -0.1 169,113 + HMPREF1058_RS12235 0.74 -0.3 169,115 + HMPREF1058_RS12235 0.74 -0.3 169,116 - HMPREF1058_RS12235 0.74 +0.5 169,116 - HMPREF1058_RS12235 0.74 +0.4 169,299 + HMPREF1058_RS12235 0.80 +0.1 169,300 - HMPREF1058_RS12235 0.80 +0.2 169,375 - HMPREF1058_RS12235 0.82 -0.2 169,378 + HMPREF1058_RS12235 0.82 -0.9 169,378 + HMPREF1058_RS12235 0.82 +0.3 169,378 + HMPREF1058_RS12235 0.82 -0.1 169,378 + HMPREF1058_RS12235 0.82 -0.0 169,430 - HMPREF1058_RS12235 0.84 -0.2 169,436 - HMPREF1058_RS12235 0.84 +0.3 169,436 - HMPREF1058_RS12235 0.84 -2.0 169,436 - HMPREF1058_RS12235 0.84 -1.1 169,455 - HMPREF1058_RS12235 0.85 +1.1 169,533 - HMPREF1058_RS12235 0.87 -0.1 169,564 + HMPREF1058_RS12235 0.88 +0.3 169,565 + HMPREF1058_RS12235 0.88 -1.1 169,603 - HMPREF1058_RS12235 0.89 -0.1 169,707 - +0.3 169,807 + +0.3 169,808 - -1.0 169,810 + +0.2 169,827 + +0.6 169,827 + +0.7 169,935 - +0.2 169,995 - +0.1 170,081 + -0.4 170,081 + -0.5 170,081 + -0.1 170,081 + -0.3 170,082 - -0.4 170,082 - +0.2 170,086 + -0.2 170,086 + +0.4 170,087 - -0.2 170,087 - +0.3 170,250 - HMPREF1058_RS12230 0.15 +1.1 170,255 - HMPREF1058_RS12230 0.16 +0.4 170,276 + HMPREF1058_RS12230 0.17 -0.4 170,316 - HMPREF1058_RS12230 0.19 -0.4 170,318 - HMPREF1058_RS12230 0.19 -0.6 170,454 - HMPREF1058_RS12230 0.26 +2.8 170,454 - HMPREF1058_RS12230 0.26 +0.2 170,517 - HMPREF1058_RS12230 0.29 -0.5 170,615 - HMPREF1058_RS12230 0.34 +0.5 170,717 - HMPREF1058_RS12230 0.39 -2.0 170,790 + HMPREF1058_RS12230 0.43 -0.4 170,791 - HMPREF1058_RS12230 0.43 -0.3 170,860 + HMPREF1058_RS12230 0.47 -0.1 170,861 - HMPREF1058_RS12230 0.47 -0.2 170,861 - HMPREF1058_RS12230 0.47 +0.6 170,861 - HMPREF1058_RS12230 0.47 -0.3 170,868 - HMPREF1058_RS12230 0.47 +0.5
Or see this region's nucleotide sequence