Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11540 and HMPREF1058_RS11535 are separated by 146 nucleotides HMPREF1058_RS11535 and HMPREF1058_RS11530 are separated by 59 nucleotides HMPREF1058_RS11530 and HMPREF1058_RS11525 are separated by 229 nucleotides
HMPREF1058_RS11540: HMPREF1058_RS11540 - flotillin family protein, at 354,019 to 355,719
_RS11540
HMPREF1058_RS11535: HMPREF1058_RS11535 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 355,866 to 357,737
_RS11535
HMPREF1058_RS11530: HMPREF1058_RS11530 - adenine phosphoribosyltransferase, at 357,797 to 358,321
_RS11530
HMPREF1058_RS11525: HMPREF1058_RS11525 - excinuclease ABC subunit UvrC, at 358,551 to 360,371
_RS11525
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.970 kb on - strand, within HMPREF1058_RS11540 at 355.032 kb on + strand, within HMPREF1058_RS11540 at 355.461 kb on + strand, within HMPREF1058_RS11540 at 355.462 kb on - strand, within HMPREF1058_RS11540 at 355.485 kb on - strand, within HMPREF1058_RS11540 at 355.584 kb on + strand at 355.752 kb on + strand at 355.753 kb on - strand at 355.805 kb on - strand at 355.807 kb on + strand at 355.808 kb on - strand at 355.875 kb on - strand at 355.894 kb on + strand at 356.000 kb on + strand at 356.001 kb on - strand at 356.057 kb on - strand, within HMPREF1058_RS11535 at 356.132 kb on + strand, within HMPREF1058_RS11535 at 356.132 kb on + strand, within HMPREF1058_RS11535 at 356.303 kb on + strand, within HMPREF1058_RS11535 at 356.304 kb on - strand, within HMPREF1058_RS11535 at 356.488 kb on + strand, within HMPREF1058_RS11535 at 356.695 kb on + strand, within HMPREF1058_RS11535 at 356.696 kb on - strand, within HMPREF1058_RS11535 at 356.968 kb on + strand, within HMPREF1058_RS11535 at 357.032 kb on + strand, within HMPREF1058_RS11535 at 357.033 kb on - strand, within HMPREF1058_RS11535 at 357.033 kb on - strand, within HMPREF1058_RS11535 at 357.137 kb on + strand, within HMPREF1058_RS11535 at 357.138 kb on - strand, within HMPREF1058_RS11535 at 357.138 kb on - strand, within HMPREF1058_RS11535 at 357.407 kb on + strand, within HMPREF1058_RS11535 at 357.419 kb on + strand, within HMPREF1058_RS11535 at 357.513 kb on + strand, within HMPREF1058_RS11535 at 357.522 kb on + strand, within HMPREF1058_RS11535 at 357.523 kb on - strand, within HMPREF1058_RS11535 at 357.650 kb on - strand at 357.716 kb on - strand at 357.716 kb on - strand at 357.716 kb on - strand at 357.716 kb on - strand at 357.773 kb on + strand at 357.784 kb on + strand at 357.919 kb on + strand, within HMPREF1058_RS11530 at 357.919 kb on + strand, within HMPREF1058_RS11530 at 357.920 kb on - strand, within HMPREF1058_RS11530 at 357.935 kb on + strand, within HMPREF1058_RS11530 at 357.936 kb on - strand, within HMPREF1058_RS11530 at 358.065 kb on + strand, within HMPREF1058_RS11530 at 358.066 kb on - strand, within HMPREF1058_RS11530 at 358.069 kb on - strand, within HMPREF1058_RS11530 at 358.079 kb on + strand, within HMPREF1058_RS11530 at 358.117 kb on + strand, within HMPREF1058_RS11530 at 358.165 kb on - strand, within HMPREF1058_RS11530 at 358.320 kb on - strand at 358.412 kb on + strand at 358.413 kb on - strand at 358.414 kb on + strand at 358.416 kb on + strand at 358.416 kb on + strand at 358.434 kb on + strand at 358.438 kb on + strand at 358.439 kb on - strand at 358.439 kb on - strand at 358.445 kb on - strand at 358.457 kb on + strand at 358.458 kb on - strand at 358.467 kb on + strand at 358.467 kb on + strand at 358.480 kb on + strand at 358.483 kb on - strand at 358.568 kb on + strand at 358.568 kb on + strand at 358.601 kb on - strand at 358.601 kb on - strand at 358.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 354,970 - HMPREF1058_RS11540 0.56 +0.1 355,032 + HMPREF1058_RS11540 0.60 -0.1 355,461 + HMPREF1058_RS11540 0.85 +0.7 355,462 - HMPREF1058_RS11540 0.85 -0.2 355,485 - HMPREF1058_RS11540 0.86 -0.1 355,584 + -2.2 355,752 + -0.5 355,753 - +0.8 355,805 - -0.8 355,807 + -0.9 355,808 - -0.7 355,875 - +0.4 355,894 + -1.6 356,000 + -1.2 356,001 - -0.6 356,057 - HMPREF1058_RS11535 0.10 -2.5 356,132 + HMPREF1058_RS11535 0.14 -0.3 356,132 + HMPREF1058_RS11535 0.14 -0.2 356,303 + HMPREF1058_RS11535 0.23 -0.6 356,304 - HMPREF1058_RS11535 0.23 -0.1 356,488 + HMPREF1058_RS11535 0.33 +0.8 356,695 + HMPREF1058_RS11535 0.44 +0.1 356,696 - HMPREF1058_RS11535 0.44 -1.2 356,968 + HMPREF1058_RS11535 0.59 -1.6 357,032 + HMPREF1058_RS11535 0.62 -1.3 357,033 - HMPREF1058_RS11535 0.62 -1.8 357,033 - HMPREF1058_RS11535 0.62 -1.6 357,137 + HMPREF1058_RS11535 0.68 -0.2 357,138 - HMPREF1058_RS11535 0.68 -1.5 357,138 - HMPREF1058_RS11535 0.68 -0.6 357,407 + HMPREF1058_RS11535 0.82 -1.4 357,419 + HMPREF1058_RS11535 0.83 -1.2 357,513 + HMPREF1058_RS11535 0.88 -1.6 357,522 + HMPREF1058_RS11535 0.88 -1.7 357,523 - HMPREF1058_RS11535 0.89 -2.0 357,650 - -1.2 357,716 - +0.2 357,716 - -1.0 357,716 - +2.0 357,716 - -1.5 357,773 + -1.2 357,784 + -0.1 357,919 + HMPREF1058_RS11530 0.23 +0.6 357,919 + HMPREF1058_RS11530 0.23 -0.9 357,920 - HMPREF1058_RS11530 0.23 +1.5 357,935 + HMPREF1058_RS11530 0.26 -0.0 357,936 - HMPREF1058_RS11530 0.26 -0.2 358,065 + HMPREF1058_RS11530 0.51 -0.8 358,066 - HMPREF1058_RS11530 0.51 -0.1 358,069 - HMPREF1058_RS11530 0.52 -0.4 358,079 + HMPREF1058_RS11530 0.54 +0.1 358,117 + HMPREF1058_RS11530 0.61 -0.4 358,165 - HMPREF1058_RS11530 0.70 -0.5 358,320 - +1.2 358,412 + -1.6 358,413 - -0.4 358,414 + +0.1 358,416 + -0.5 358,416 + -0.7 358,434 + +0.3 358,438 + -0.2 358,439 - +0.2 358,439 - -0.4 358,445 - +0.2 358,457 + -0.2 358,458 - -0.4 358,467 + +0.8 358,467 + +0.1 358,480 + +0.7 358,483 - -0.9 358,568 + -0.3 358,568 + -0.2 358,601 - +0.4 358,601 - -0.3 358,709 + -0.4
Or see this region's nucleotide sequence