Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10820

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10825 and HMPREF1058_RS10820 are separated by 104 nucleotidesHMPREF1058_RS10820 and HMPREF1058_RS10815 are separated by 164 nucleotides HMPREF1058_RS10825: HMPREF1058_RS10825 - glycosyltransferase family 9 protein, at 553,139 to 554,170 _RS10825 HMPREF1058_RS10820: HMPREF1058_RS10820 - 4-phosphoerythronate dehydrogenase PdxB, at 554,275 to 555,300 _RS10820 HMPREF1058_RS10815: HMPREF1058_RS10815 - DUF4249 domain-containing protein, at 555,465 to 556,430 _RS10815 Position (kb) 554 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 553.679 kb on - strand, within HMPREF1058_RS10825at 553.734 kb on - strand, within HMPREF1058_RS10825at 553.734 kb on - strand, within HMPREF1058_RS10825at 553.734 kb on - strand, within HMPREF1058_RS10825at 553.734 kb on - strand, within HMPREF1058_RS10825at 553.951 kb on - strand, within HMPREF1058_RS10825at 553.951 kb on - strand, within HMPREF1058_RS10825at 553.951 kb on - strand, within HMPREF1058_RS10825at 553.951 kb on - strand, within HMPREF1058_RS10825at 554.012 kb on - strand, within HMPREF1058_RS10825at 554.051 kb on - strand, within HMPREF1058_RS10825at 554.055 kb on - strand, within HMPREF1058_RS10825at 554.154 kb on - strandat 554.171 kb on - strandat 554.171 kb on - strandat 554.226 kb on - strandat 554.245 kb on + strandat 554.246 kb on - strandat 554.288 kb on + strandat 554.308 kb on - strandat 554.308 kb on - strandat 554.309 kb on + strandat 554.309 kb on + strandat 554.309 kb on + strandat 554.309 kb on + strandat 554.348 kb on - strandat 554.490 kb on + strand, within HMPREF1058_RS10820at 554.490 kb on + strand, within HMPREF1058_RS10820at 554.490 kb on + strand, within HMPREF1058_RS10820at 554.503 kb on + strand, within HMPREF1058_RS10820at 554.570 kb on - strand, within HMPREF1058_RS10820at 554.586 kb on - strand, within HMPREF1058_RS10820at 554.589 kb on - strand, within HMPREF1058_RS10820at 554.782 kb on - strand, within HMPREF1058_RS10820at 554.783 kb on + strand, within HMPREF1058_RS10820at 554.784 kb on - strand, within HMPREF1058_RS10820at 554.784 kb on - strand, within HMPREF1058_RS10820at 554.784 kb on - strand, within HMPREF1058_RS10820at 554.881 kb on - strand, within HMPREF1058_RS10820at 554.906 kb on + strand, within HMPREF1058_RS10820at 554.907 kb on - strand, within HMPREF1058_RS10820at 554.907 kb on - strand, within HMPREF1058_RS10820at 554.910 kb on - strand, within HMPREF1058_RS10820at 554.970 kb on + strand, within HMPREF1058_RS10820at 554.970 kb on + strand, within HMPREF1058_RS10820at 555.036 kb on + strand, within HMPREF1058_RS10820at 555.037 kb on - strand, within HMPREF1058_RS10820at 555.037 kb on - strand, within HMPREF1058_RS10820at 555.038 kb on + strand, within HMPREF1058_RS10820at 555.047 kb on - strand, within HMPREF1058_RS10820at 555.100 kb on - strand, within HMPREF1058_RS10820at 555.112 kb on - strand, within HMPREF1058_RS10820at 555.131 kb on + strand, within HMPREF1058_RS10820at 555.152 kb on - strand, within HMPREF1058_RS10820at 555.153 kb on + strand, within HMPREF1058_RS10820at 555.154 kb on - strand, within HMPREF1058_RS10820at 555.161 kb on - strand, within HMPREF1058_RS10820at 555.196 kb on + strand, within HMPREF1058_RS10820at 555.197 kb on - strand, within HMPREF1058_RS10820at 555.197 kb on - strand, within HMPREF1058_RS10820at 555.316 kb on + strandat 555.492 kb on + strandat 555.494 kb on + strandat 555.494 kb on + strandat 555.495 kb on - strandat 555.527 kb on + strandat 555.562 kb on - strand, within HMPREF1058_RS10815at 555.665 kb on - strand, within HMPREF1058_RS10815at 555.723 kb on + strand, within HMPREF1058_RS10815at 555.724 kb on - strand, within HMPREF1058_RS10815at 555.724 kb on - strand, within HMPREF1058_RS10815at 555.728 kb on + strand, within HMPREF1058_RS10815at 555.731 kb on - strand, within HMPREF1058_RS10815at 555.801 kb on - strand, within HMPREF1058_RS10815at 555.843 kb on + strand, within HMPREF1058_RS10815at 555.844 kb on - strand, within HMPREF1058_RS10815at 555.844 kb on - strand, within HMPREF1058_RS10815at 555.845 kb on + strand, within HMPREF1058_RS10815at 555.852 kb on + strand, within HMPREF1058_RS10815at 555.852 kb on + strand, within HMPREF1058_RS10815at 555.888 kb on + strand, within HMPREF1058_RS10815at 555.911 kb on - strand, within HMPREF1058_RS10815at 555.914 kb on - strand, within HMPREF1058_RS10815at 555.953 kb on - strand, within HMPREF1058_RS10815at 555.953 kb on - strand, within HMPREF1058_RS10815at 555.967 kb on + strand, within HMPREF1058_RS10815at 555.989 kb on - strand, within HMPREF1058_RS10815at 556.008 kb on - strand, within HMPREF1058_RS10815at 556.032 kb on - strand, within HMPREF1058_RS10815at 556.035 kb on + strand, within HMPREF1058_RS10815at 556.036 kb on - strand, within HMPREF1058_RS10815at 556.047 kb on + strand, within HMPREF1058_RS10815at 556.052 kb on + strand, within HMPREF1058_RS10815at 556.052 kb on + strand, within HMPREF1058_RS10815at 556.053 kb on - strand, within HMPREF1058_RS10815at 556.140 kb on + strand, within HMPREF1058_RS10815at 556.141 kb on - strand, within HMPREF1058_RS10815at 556.141 kb on - strand, within HMPREF1058_RS10815at 556.141 kb on - strand, within HMPREF1058_RS10815at 556.141 kb on - strand, within HMPREF1058_RS10815at 556.172 kb on + strand, within HMPREF1058_RS10815at 556.173 kb on - strand, within HMPREF1058_RS10815at 556.219 kb on + strand, within HMPREF1058_RS10815at 556.220 kb on - strand, within HMPREF1058_RS10815at 556.252 kb on + strand, within HMPREF1058_RS10815

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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553,679 - HMPREF1058_RS10825 0.52 +0.0
553,734 - HMPREF1058_RS10825 0.58 +0.1
553,734 - HMPREF1058_RS10825 0.58 +1.1
553,734 - HMPREF1058_RS10825 0.58 -0.6
553,734 - HMPREF1058_RS10825 0.58 -0.6
553,951 - HMPREF1058_RS10825 0.79 -0.3
553,951 - HMPREF1058_RS10825 0.79 -0.2
553,951 - HMPREF1058_RS10825 0.79 -0.6
553,951 - HMPREF1058_RS10825 0.79 -1.1
554,012 - HMPREF1058_RS10825 0.85 -0.7
554,051 - HMPREF1058_RS10825 0.88 -0.3
554,055 - HMPREF1058_RS10825 0.89 -0.5
554,154 - +1.1
554,171 - +0.4
554,171 - +1.9
554,226 - +0.9
554,245 + +0.8
554,246 - +0.2
554,288 + -0.5
554,308 - -0.6
554,308 - -1.2
554,309 + +0.2
554,309 + -1.1
554,309 + -0.0
554,309 + -1.3
554,348 - -1.6
554,490 + HMPREF1058_RS10820 0.21 -0.6
554,490 + HMPREF1058_RS10820 0.21 -0.6
554,490 + HMPREF1058_RS10820 0.21 -2.0
554,503 + HMPREF1058_RS10820 0.22 -1.1
554,570 - HMPREF1058_RS10820 0.29 -2.3
554,586 - HMPREF1058_RS10820 0.30 -1.1
554,589 - HMPREF1058_RS10820 0.31 -2.6
554,782 - HMPREF1058_RS10820 0.49 +0.7
554,783 + HMPREF1058_RS10820 0.50 -1.0
554,784 - HMPREF1058_RS10820 0.50 -2.0
554,784 - HMPREF1058_RS10820 0.50 -0.3
554,784 - HMPREF1058_RS10820 0.50 -1.8
554,881 - HMPREF1058_RS10820 0.59 -1.3
554,906 + HMPREF1058_RS10820 0.62 -1.1
554,907 - HMPREF1058_RS10820 0.62 -0.3
554,907 - HMPREF1058_RS10820 0.62 +0.4
554,910 - HMPREF1058_RS10820 0.62 -1.7
554,970 + HMPREF1058_RS10820 0.68 -1.6
554,970 + HMPREF1058_RS10820 0.68 -0.4
555,036 + HMPREF1058_RS10820 0.74 -1.7
555,037 - HMPREF1058_RS10820 0.74 -2.7
555,037 - HMPREF1058_RS10820 0.74 -3.3
555,038 + HMPREF1058_RS10820 0.74 -2.6
555,047 - HMPREF1058_RS10820 0.75 -1.9
555,100 - HMPREF1058_RS10820 0.80 -0.9
555,112 - HMPREF1058_RS10820 0.82 -1.5
555,131 + HMPREF1058_RS10820 0.83 -1.5
555,152 - HMPREF1058_RS10820 0.85 -1.8
555,153 + HMPREF1058_RS10820 0.86 -2.6
555,154 - HMPREF1058_RS10820 0.86 -1.6
555,161 - HMPREF1058_RS10820 0.86 -2.3
555,196 + HMPREF1058_RS10820 0.90 -1.5
555,197 - HMPREF1058_RS10820 0.90 +0.0
555,197 - HMPREF1058_RS10820 0.90 -2.7
555,316 + -0.1
555,492 + -1.1
555,494 + -0.1
555,494 + -0.5
555,495 - -0.1
555,527 + -0.1
555,562 - HMPREF1058_RS10815 0.10 -0.0
555,665 - HMPREF1058_RS10815 0.21 -0.5
555,723 + HMPREF1058_RS10815 0.27 -1.3
555,724 - HMPREF1058_RS10815 0.27 -1.4
555,724 - HMPREF1058_RS10815 0.27 -0.5
555,728 + HMPREF1058_RS10815 0.27 -1.0
555,731 - HMPREF1058_RS10815 0.28 +1.1
555,801 - HMPREF1058_RS10815 0.35 -0.4
555,843 + HMPREF1058_RS10815 0.39 -0.4
555,844 - HMPREF1058_RS10815 0.39 +0.0
555,844 - HMPREF1058_RS10815 0.39 +1.9
555,845 + HMPREF1058_RS10815 0.39 -0.6
555,852 + HMPREF1058_RS10815 0.40 +0.0
555,852 + HMPREF1058_RS10815 0.40 -0.1
555,888 + HMPREF1058_RS10815 0.44 -1.4
555,911 - HMPREF1058_RS10815 0.46 -2.0
555,914 - HMPREF1058_RS10815 0.46 -1.0
555,953 - HMPREF1058_RS10815 0.51 -0.4
555,953 - HMPREF1058_RS10815 0.51 -1.0
555,967 + HMPREF1058_RS10815 0.52 +0.4
555,989 - HMPREF1058_RS10815 0.54 +0.3
556,008 - HMPREF1058_RS10815 0.56 +0.2
556,032 - HMPREF1058_RS10815 0.59 +0.7
556,035 + HMPREF1058_RS10815 0.59 +0.4
556,036 - HMPREF1058_RS10815 0.59 -0.9
556,047 + HMPREF1058_RS10815 0.60 +0.4
556,052 + HMPREF1058_RS10815 0.61 +0.0
556,052 + HMPREF1058_RS10815 0.61 +0.6
556,053 - HMPREF1058_RS10815 0.61 -0.1
556,140 + HMPREF1058_RS10815 0.70 -0.2
556,141 - HMPREF1058_RS10815 0.70 -0.8
556,141 - HMPREF1058_RS10815 0.70 -0.1
556,141 - HMPREF1058_RS10815 0.70 +0.2
556,141 - HMPREF1058_RS10815 0.70 +2.9
556,172 + HMPREF1058_RS10815 0.73 +0.0
556,173 - HMPREF1058_RS10815 0.73 -0.5
556,219 + HMPREF1058_RS10815 0.78 -0.1
556,220 - HMPREF1058_RS10815 0.78 +1.9
556,252 + HMPREF1058_RS10815 0.81 +0.7

Or see this region's nucleotide sequence