Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09785 and HMPREF1058_RS0119690 are separated by 20 nucleotides HMPREF1058_RS0119690 and HMPREF1058_RS09780 are separated by 3 nucleotides HMPREF1058_RS09780 and HMPREF1058_RS09775 are separated by 201 nucleotides HMPREF1058_RS09775 and HMPREF1058_RS09770 are separated by 31 nucleotides HMPREF1058_RS09770 and HMPREF1058_RS09765 are separated by 77 nucleotides HMPREF1058_RS09765 and HMPREF1058_RS09760 are separated by 11 nucleotides
HMPREF1058_RS09785: HMPREF1058_RS09785 - DUF3945 domain-containing protein, at 796,857 to 798,428
_RS09785
HMPREF1058_RS0119690: HMPREF1058_RS0119690 - helix-turn-helix domain-containing protein, at 798,449 to 798,799
_RS0119690
HMPREF1058_RS09780: HMPREF1058_RS09780 - helix-turn-helix domain-containing protein, at 798,803 to 799,165
_RS09780
HMPREF1058_RS09775: HMPREF1058_RS09775 - helix-turn-helix domain-containing protein, at 799,367 to 799,666
_RS09775
HMPREF1058_RS09770: HMPREF1058_RS09770 - helix-turn-helix domain-containing protein, at 799,698 to 800,003
_RS09770
HMPREF1058_RS09765: HMPREF1058_RS09765 - hypothetical protein, at 800,081 to 800,443
_RS09765
HMPREF1058_RS09760: HMPREF1058_RS09760 - site-specific integrase, at 800,455 to 801,690
_RS09760
Position (kb) 799
800 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 798.442 kb on + strand at 798.442 kb on + strand at 798.491 kb on + strand, within HMPREF1058_RS0119690 at 798.493 kb on + strand, within HMPREF1058_RS0119690 at 798.555 kb on + strand, within HMPREF1058_RS0119690 at 798.558 kb on + strand, within HMPREF1058_RS0119690 at 798.804 kb on + strand at 798.804 kb on + strand at 799.134 kb on + strand at 799.380 kb on + strand at 799.383 kb on + strand at 799.383 kb on + strand at 799.527 kb on + strand, within HMPREF1058_RS09775 at 799.674 kb on + strand at 800.057 kb on - strand at 800.109 kb on - strand at 800.121 kb on + strand, within HMPREF1058_RS09765 at 800.121 kb on + strand, within HMPREF1058_RS09765 at 800.121 kb on + strand, within HMPREF1058_RS09765 at 800.188 kb on - strand, within HMPREF1058_RS09765 at 800.233 kb on - strand, within HMPREF1058_RS09765
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 798,442 + -0.9 798,442 + +2.8 798,491 + HMPREF1058_RS0119690 0.12 +1.8 798,493 + HMPREF1058_RS0119690 0.13 -1.9 798,555 + HMPREF1058_RS0119690 0.30 +0.0 798,558 + HMPREF1058_RS0119690 0.31 -0.8 798,804 + +1.3 798,804 + +0.4 799,134 + +0.4 799,380 + -0.0 799,383 + -0.2 799,383 + +0.1 799,527 + HMPREF1058_RS09775 0.53 -1.2 799,674 + -0.9 800,057 - +0.4 800,109 - -0.5 800,121 + HMPREF1058_RS09765 0.11 +0.3 800,121 + HMPREF1058_RS09765 0.11 +0.9 800,121 + HMPREF1058_RS09765 0.11 +0.1 800,188 - HMPREF1058_RS09765 0.29 -0.4 800,233 - HMPREF1058_RS09765 0.42 -1.7
Or see this region's nucleotide sequence