Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09630 and HMPREF1058_RS09625 are separated by 11 nucleotides HMPREF1058_RS09625 and HMPREF1058_RS09620 are separated by 33 nucleotides HMPREF1058_RS09620 and HMPREF1058_RS09615 are separated by 127 nucleotides
HMPREF1058_RS09630: HMPREF1058_RS09630 - outer membrane protein assembly factor BamA, at 831,561 to 834,203
_RS09630
HMPREF1058_RS09625: HMPREF1058_RS09625 - isoprenyl transferase, at 834,215 to 834,946
_RS09625
HMPREF1058_RS09620: HMPREF1058_RS09620 - hypothetical protein, at 834,980 to 836,377
_RS09620
HMPREF1058_RS09615: HMPREF1058_RS09615 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 836,505 to 837,557
_RS09615
Position (kb) 834
835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.219 kb on - strand at 834.219 kb on - strand at 834.962 kb on - strand at 835.007 kb on - strand at 835.049 kb on - strand at 835.049 kb on - strand at 835.081 kb on - strand at 835.108 kb on - strand at 835.141 kb on - strand, within HMPREF1058_RS09620 at 835.246 kb on - strand, within HMPREF1058_RS09620 at 835.261 kb on - strand, within HMPREF1058_RS09620 at 835.277 kb on - strand, within HMPREF1058_RS09620 at 835.319 kb on - strand, within HMPREF1058_RS09620 at 835.444 kb on - strand, within HMPREF1058_RS09620 at 836.398 kb on - strand at 836.459 kb on - strand at 836.464 kb on - strand at 836.507 kb on - strand at 836.538 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 834,219 - -0.5 834,219 - -3.0 834,962 - -0.5 835,007 - -0.2 835,049 - -1.1 835,049 - -0.8 835,081 - +0.1 835,108 - -0.1 835,141 - HMPREF1058_RS09620 0.12 -1.0 835,246 - HMPREF1058_RS09620 0.19 -1.1 835,261 - HMPREF1058_RS09620 0.20 -1.0 835,277 - HMPREF1058_RS09620 0.21 -2.8 835,319 - HMPREF1058_RS09620 0.24 -0.9 835,444 - HMPREF1058_RS09620 0.33 -1.5 836,398 - +0.5 836,459 - -0.8 836,464 - -0.5 836,507 - +0.6 836,538 + +0.2
Or see this region's nucleotide sequence