Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09615 and HMPREF1058_RS09610 are separated by 44 nucleotides HMPREF1058_RS09610 and HMPREF1058_RS09605 are separated by 1 nucleotides HMPREF1058_RS09605 and HMPREF1058_RS09600 overlap by 20 nucleotides
HMPREF1058_RS09615: HMPREF1058_RS09615 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 836,505 to 837,557
_RS09615
HMPREF1058_RS09610: HMPREF1058_RS09610 - peptide chain release factor N(5)-glutamine methyltransferase, at 837,602 to 838,438
_RS09610
HMPREF1058_RS09605: HMPREF1058_RS09605 - RecX family transcriptional regulator, at 838,440 to 838,925
_RS09605
HMPREF1058_RS09600: HMPREF1058_RS09600 - ComF family protein, at 838,906 to 839,601
_RS09600
Position (kb) 837
838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 837.676 kb on + strand at 837.689 kb on - strand, within HMPREF1058_RS09610 at 837.807 kb on - strand, within HMPREF1058_RS09610 at 837.813 kb on - strand, within HMPREF1058_RS09610 at 837.816 kb on + strand, within HMPREF1058_RS09610 at 837.844 kb on + strand, within HMPREF1058_RS09610 at 837.911 kb on - strand, within HMPREF1058_RS09610 at 837.912 kb on + strand, within HMPREF1058_RS09610 at 837.913 kb on - strand, within HMPREF1058_RS09610 at 837.922 kb on + strand, within HMPREF1058_RS09610 at 837.923 kb on - strand, within HMPREF1058_RS09610 at 837.923 kb on - strand, within HMPREF1058_RS09610 at 837.926 kb on + strand, within HMPREF1058_RS09610 at 837.938 kb on - strand, within HMPREF1058_RS09610 at 838.161 kb on - strand, within HMPREF1058_RS09610 at 838.161 kb on - strand, within HMPREF1058_RS09610 at 838.163 kb on - strand, within HMPREF1058_RS09610 at 838.163 kb on - strand, within HMPREF1058_RS09610 at 838.195 kb on + strand, within HMPREF1058_RS09610 at 838.196 kb on - strand, within HMPREF1058_RS09610 at 838.270 kb on - strand, within HMPREF1058_RS09610 at 838.354 kb on + strand, within HMPREF1058_RS09610 at 838.355 kb on - strand at 838.454 kb on - strand at 838.474 kb on - strand at 838.476 kb on - strand at 838.522 kb on + strand, within HMPREF1058_RS09605 at 838.534 kb on + strand, within HMPREF1058_RS09605 at 838.599 kb on + strand, within HMPREF1058_RS09605 at 838.600 kb on - strand, within HMPREF1058_RS09605 at 838.600 kb on - strand, within HMPREF1058_RS09605 at 838.752 kb on + strand, within HMPREF1058_RS09605 at 838.752 kb on + strand, within HMPREF1058_RS09605 at 838.752 kb on + strand, within HMPREF1058_RS09605 at 838.754 kb on + strand, within HMPREF1058_RS09605 at 838.754 kb on + strand, within HMPREF1058_RS09605 at 838.755 kb on - strand, within HMPREF1058_RS09605 at 838.766 kb on - strand, within HMPREF1058_RS09605 at 838.815 kb on + strand, within HMPREF1058_RS09605 at 838.979 kb on + strand, within HMPREF1058_RS09600 at 839.052 kb on + strand, within HMPREF1058_RS09600 at 839.056 kb on - strand, within HMPREF1058_RS09600 at 839.060 kb on + strand, within HMPREF1058_RS09600 at 839.061 kb on - strand, within HMPREF1058_RS09600 at 839.061 kb on - strand, within HMPREF1058_RS09600 at 839.061 kb on - strand, within HMPREF1058_RS09600 at 839.161 kb on + strand, within HMPREF1058_RS09600 at 839.343 kb on + strand, within HMPREF1058_RS09600 at 839.344 kb on - strand, within HMPREF1058_RS09600 at 839.350 kb on - strand, within HMPREF1058_RS09600 at 839.358 kb on + strand, within HMPREF1058_RS09600 at 839.380 kb on + strand, within HMPREF1058_RS09600 at 839.380 kb on + strand, within HMPREF1058_RS09600 at 839.382 kb on + strand, within HMPREF1058_RS09600 at 839.410 kb on + strand, within HMPREF1058_RS09600
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 837,676 + -1.1 837,689 - HMPREF1058_RS09610 0.10 -1.8 837,807 - HMPREF1058_RS09610 0.24 -1.4 837,813 - HMPREF1058_RS09610 0.25 -1.7 837,816 + HMPREF1058_RS09610 0.26 -0.3 837,844 + HMPREF1058_RS09610 0.29 -1.2 837,911 - HMPREF1058_RS09610 0.37 -0.9 837,912 + HMPREF1058_RS09610 0.37 -1.7 837,913 - HMPREF1058_RS09610 0.37 -0.4 837,922 + HMPREF1058_RS09610 0.38 -2.7 837,923 - HMPREF1058_RS09610 0.38 -1.0 837,923 - HMPREF1058_RS09610 0.38 -2.5 837,926 + HMPREF1058_RS09610 0.39 -1.9 837,938 - HMPREF1058_RS09610 0.40 -0.5 838,161 - HMPREF1058_RS09610 0.67 -1.1 838,161 - HMPREF1058_RS09610 0.67 -1.1 838,163 - HMPREF1058_RS09610 0.67 -0.2 838,163 - HMPREF1058_RS09610 0.67 -0.0 838,195 + HMPREF1058_RS09610 0.71 +0.5 838,196 - HMPREF1058_RS09610 0.71 -0.1 838,270 - HMPREF1058_RS09610 0.80 -0.0 838,354 + HMPREF1058_RS09610 0.90 -1.1 838,355 - -0.2 838,454 - +0.1 838,474 - -0.8 838,476 - -1.4 838,522 + HMPREF1058_RS09605 0.17 -0.6 838,534 + HMPREF1058_RS09605 0.19 +0.0 838,599 + HMPREF1058_RS09605 0.33 -0.9 838,600 - HMPREF1058_RS09605 0.33 +1.4 838,600 - HMPREF1058_RS09605 0.33 -1.7 838,752 + HMPREF1058_RS09605 0.64 +0.3 838,752 + HMPREF1058_RS09605 0.64 +0.2 838,752 + HMPREF1058_RS09605 0.64 -0.3 838,754 + HMPREF1058_RS09605 0.65 +0.3 838,754 + HMPREF1058_RS09605 0.65 -0.3 838,755 - HMPREF1058_RS09605 0.65 -0.6 838,766 - HMPREF1058_RS09605 0.67 -0.9 838,815 + HMPREF1058_RS09605 0.77 -0.1 838,979 + HMPREF1058_RS09600 0.10 -0.0 839,052 + HMPREF1058_RS09600 0.21 +1.1 839,056 - HMPREF1058_RS09600 0.22 -0.8 839,060 + HMPREF1058_RS09600 0.22 -0.6 839,061 - HMPREF1058_RS09600 0.22 -1.5 839,061 - HMPREF1058_RS09600 0.22 -0.3 839,061 - HMPREF1058_RS09600 0.22 -2.8 839,161 + HMPREF1058_RS09600 0.37 -1.0 839,343 + HMPREF1058_RS09600 0.63 -0.2 839,344 - HMPREF1058_RS09600 0.63 +0.0 839,350 - HMPREF1058_RS09600 0.64 +0.1 839,358 + HMPREF1058_RS09600 0.65 -0.6 839,380 + HMPREF1058_RS09600 0.68 +0.0 839,380 + HMPREF1058_RS09600 0.68 -0.3 839,382 + HMPREF1058_RS09600 0.68 +0.5 839,410 + HMPREF1058_RS09600 0.72 -2.9
Or see this region's nucleotide sequence