Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08670

Experiment: FSL 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	FSL 10 mg/mL (C)
1,074,826	-		HMPREF1058_RS08675	0.70	-2.6
1,074,847	-		HMPREF1058_RS08675	0.71	-0.9
1,074,857	+		HMPREF1058_RS08675	0.71	-0.5
1,074,861	+		HMPREF1058_RS08675	0.71	-1.7
1,074,869	+		HMPREF1058_RS08675	0.72	-1.4
1,074,869	+		HMPREF1058_RS08675	0.72	-1.0
1,074,873	+		HMPREF1058_RS08675	0.72	-3.0
1,074,883	+		HMPREF1058_RS08675	0.72	-2.5
1,074,884	-		HMPREF1058_RS08675	0.72	-0.7
1,074,951	+		HMPREF1058_RS08675	0.74	-1.5
1,075,015	+		HMPREF1058_RS08675	0.76	-3.2
1,075,029	+		HMPREF1058_RS08675	0.77	-2.3
1,075,029	+		HMPREF1058_RS08675	0.77	-2.8
1,075,029	+		HMPREF1058_RS08675	0.77	-3.4
1,075,030	-		HMPREF1058_RS08675	0.77	-3.4
1,075,065	+		HMPREF1058_RS08675	0.78	-4.0
1,075,065	+		HMPREF1058_RS08675	0.78	-3.0
1,075,065	+		HMPREF1058_RS08675	0.78	-2.4
1,075,066	-		HMPREF1058_RS08675	0.78	-1.9
1,075,075	-		HMPREF1058_RS08675	0.78	-2.0
1,075,075	-		HMPREF1058_RS08675	0.78	-0.1
1,075,075	-		HMPREF1058_RS08675	0.78	-1.4
1,075,135	-		HMPREF1058_RS08675	0.80	-4.5
1,075,135	-		HMPREF1058_RS08675	0.80	-1.1
1,075,188	-		HMPREF1058_RS08675	0.81	-0.1
1,075,312	+		HMPREF1058_RS08675	0.85	-1.4
1,075,335	-		HMPREF1058_RS08675	0.86	-2.9
1,075,341	+		HMPREF1058_RS08675	0.86	-2.6
1,075,341	+		HMPREF1058_RS08675	0.86	-0.6
1,075,346	+		HMPREF1058_RS08675	0.86	-3.4
1,075,348	+		HMPREF1058_RS08675	0.86	-2.1
1,075,348	+		HMPREF1058_RS08675	0.86	-2.7
1,075,348	+		HMPREF1058_RS08675	0.86	-1.1
1,075,349	-		HMPREF1058_RS08675	0.86	-3.7
1,075,349	-		HMPREF1058_RS08675	0.86	-2.6
1,075,349	-		HMPREF1058_RS08675	0.86	-1.1
1,075,419	+		HMPREF1058_RS08675	0.89	-1.0
1,075,463	-		HMPREF1058_RS08675	0.90	-2.0
1,075,513	-				-2.8
1,075,533	+				-1.2
1,075,533	+				-3.4
1,075,623	-				-0.9
1,075,664	+				-1.6
1,075,670	-				-1.7
1,075,713	+				-0.8
1,075,713	+				-0.3
1,075,717	-				-2.7
1,075,821	-				-0.8
1,075,841	+				-1.4
1,075,841	+				-1.5
1,075,843	+				-1.4
1,075,847	+				-0.9
1,075,918	-				-1.1
1,075,934	-				-1.1
1,075,965	+				-1.8
1,075,966	-				-1.6
1,076,002	+		HMPREF1058_RS08670	0.11	-1.2
1,076,003	-		HMPREF1058_RS08670	0.11	-0.7
1,076,042	-		HMPREF1058_RS08670	0.14	-2.0
1,076,097	+		HMPREF1058_RS08670	0.17	-1.4
1,076,130	+		HMPREF1058_RS08670	0.19	-2.3
1,076,224	+		HMPREF1058_RS08670	0.25	-0.3
1,076,242	+		HMPREF1058_RS08670	0.26	-3.3
1,076,248	-		HMPREF1058_RS08670	0.27	-1.3
1,076,313	+		HMPREF1058_RS08670	0.31	-2.4
1,076,398	-		HMPREF1058_RS08670	0.36	-3.0
1,076,398	-		HMPREF1058_RS08670	0.36	-2.5
1,076,398	-		HMPREF1058_RS08670	0.36	-1.1
1,076,399	+		HMPREF1058_RS08670	0.36	-2.6
1,076,399	+		HMPREF1058_RS08670	0.36	-2.8
1,076,399	+		HMPREF1058_RS08670	0.36	-2.4
1,076,400	-		HMPREF1058_RS08670	0.36	-3.0
1,076,400	-		HMPREF1058_RS08670	0.36	+0.2
1,076,431	+		HMPREF1058_RS08670	0.38	-2.1
1,076,440	-		HMPREF1058_RS08670	0.39	-1.8
1,076,475	+		HMPREF1058_RS08670	0.41	-1.9
1,076,540	-		HMPREF1058_RS08670	0.45	-1.2
1,076,541	+		HMPREF1058_RS08670	0.45	-1.5
1,076,542	-		HMPREF1058_RS08670	0.45	-1.5
1,076,542	-		HMPREF1058_RS08670	0.45	-2.2
1,076,625	+		HMPREF1058_RS08670	0.51	+1.2
1,076,625	+		HMPREF1058_RS08670	0.51	-1.9
1,076,626	-		HMPREF1058_RS08670	0.51	-1.1
1,076,628	+		HMPREF1058_RS08670	0.51	-1.0
1,076,629	-		HMPREF1058_RS08670	0.51	-2.2
1,076,629	-		HMPREF1058_RS08670	0.51	-0.0
1,076,631	+		HMPREF1058_RS08670	0.51	-1.7
1,076,681	-		HMPREF1058_RS08670	0.54	-1.5
1,076,685	+		HMPREF1058_RS08670	0.54	-2.2
1,076,685	+		HMPREF1058_RS08670	0.54	-2.1
1,076,685	+		HMPREF1058_RS08670	0.54	-2.1
1,076,686	-		HMPREF1058_RS08670	0.54	-3.3
1,076,686	-		HMPREF1058_RS08670	0.54	-0.6
1,076,732	-		HMPREF1058_RS08670	0.57	+0.0
1,076,785	-		HMPREF1058_RS08670	0.61	-0.2
1,076,842	-		HMPREF1058_RS08670	0.64	-0.5
1,076,881	-		HMPREF1058_RS08670	0.67	-2.2
1,076,881	-		HMPREF1058_RS08670	0.67	-2.6
1,076,922	-		HMPREF1058_RS08670	0.69	-3.4
1,076,923	+		HMPREF1058_RS08670	0.69	-2.2
1,076,923	+		HMPREF1058_RS08670	0.69	+0.0
1,076,924	-		HMPREF1058_RS08670	0.69	-1.6
1,076,924	-		HMPREF1058_RS08670	0.69	-1.6
1,076,924	-		HMPREF1058_RS08670	0.69	-0.8
1,076,927	+		HMPREF1058_RS08670	0.70	-2.4
1,076,928	-		HMPREF1058_RS08670	0.70	-1.7
1,076,928	-		HMPREF1058_RS08670	0.70	-3.0
1,076,982	+		HMPREF1058_RS08670	0.73	-0.3
1,076,983	-		HMPREF1058_RS08670	0.73	-3.0
1,077,004	-		HMPREF1058_RS08670	0.74	-1.7
1,077,008	-		HMPREF1058_RS08670	0.75	+1.1
1,077,140	+		HMPREF1058_RS08670	0.83	-1.3
1,077,140	+		HMPREF1058_RS08670	0.83	-1.7
1,077,140	+		HMPREF1058_RS08670	0.83	-3.0
1,077,140	+		HMPREF1058_RS08670	0.83	-1.6
1,077,141	-		HMPREF1058_RS08670	0.83	-1.3
1,077,141	-		HMPREF1058_RS08670	0.83	-1.7
1,077,247	+		HMPREF1058_RS08670	0.90	-2.3
1,077,247	+		HMPREF1058_RS08670	0.90	-1.5
1,077,248	-		HMPREF1058_RS08670	0.90	+2.0
1,077,248	-		HMPREF1058_RS08670	0.90	-2.9
1,077,265	+				+0.2
1,077,270	+				-3.1
1,077,289	-				-2.3
1,077,289	-				-0.5
1,077,299	-				-1.1
1,077,346	-				-2.2
1,077,406	+				-0.1
1,077,409	+				+0.3
1,077,409	+				+0.1
1,077,410	-				+0.8
1,077,410	-				-2.7
1,077,440	-				-1.6
1,077,496	+				-0.1
1,077,498	+				-0.8
1,077,567	-		HMPREF1058_RS21455	0.10	+0.2
1,077,570	-		HMPREF1058_RS21455	0.12	-0.1
1,077,571	+		HMPREF1058_RS21455	0.12	-0.2
1,077,734	-		HMPREF1058_RS21455	0.80	+0.6
1,077,774	+				-0.6
1,077,788	-				-0.2
1,077,806	+				+0.3
1,077,807	-				-1.0
1,077,812	+				-0.6
1,077,849	+				+0.3
1,077,849	+				-0.5
1,077,850	-				+0.5
1,077,851	+				+0.0
1,077,851	-				-0.9
1,077,854	+				+0.5
1,077,854	+				-1.1
1,077,855	-				+0.1
1,077,855	-				+0.4
1,077,856	+				+0.5
1,077,856	+				-1.6
1,077,856	+				-0.7
1,077,856	+				+0.7
1,077,857	-				-0.4
1,077,857	-				-0.0
1,077,875	+				-0.2
1,077,889	+				+0.7
1,077,917	+				+0.3
1,077,977	+		HMPREF1058_RS08665	0.15	+2.8
1,077,977	+		HMPREF1058_RS08665	0.15	-0.0
1,077,997	+		HMPREF1058_RS08665	0.17	-1.4
1,077,998	-		HMPREF1058_RS08665	0.17	+0.5
1,078,050	+		HMPREF1058_RS08665	0.21	-1.3
1,078,055	-		HMPREF1058_RS08665	0.22	+0.5
1,078,055	-		HMPREF1058_RS08665	0.22	-0.9
1,078,090	+		HMPREF1058_RS08665	0.25	-1.0
1,078,091	-		HMPREF1058_RS08665	0.25	+1.0
1,078,131	+		HMPREF1058_RS08665	0.28	-0.1
1,078,132	-		HMPREF1058_RS08665	0.29	-0.6
1,078,132	-		HMPREF1058_RS08665	0.29	+0.8
1,078,149	+		HMPREF1058_RS08665	0.30	-0.3
1,078,157	-		HMPREF1058_RS08665	0.31	-0.0
1,078,157	-		HMPREF1058_RS08665	0.31	-0.0
1,078,158	+		HMPREF1058_RS08665	0.31	+0.4
1,078,165	+		HMPREF1058_RS08665	0.31	-0.3
1,078,267	-		HMPREF1058_RS08665	0.40	-0.1
1,078,298	-		HMPREF1058_RS08665	0.43	-0.3
1,078,298	-		HMPREF1058_RS08665	0.43	+0.6
1,078,399	-		HMPREF1058_RS08665	0.52	+0.0
1,078,399	-		HMPREF1058_RS08665	0.52	+0.2