Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08330 and HMPREF1058_RS08325 are separated by 118 nucleotides HMPREF1058_RS08325 and HMPREF1058_RS08320 overlap by 4 nucleotides HMPREF1058_RS08320 and HMPREF1058_RS08315 are separated by 6 nucleotides
HMPREF1058_RS08330: HMPREF1058_RS08330 - NAD kinase, at 1,191,596 to 1,192,468
_RS08330
HMPREF1058_RS08325: HMPREF1058_RS08325 - pyridoxine 5'-phosphate synthase, at 1,192,587 to 1,193,303
_RS08325
HMPREF1058_RS08320: HMPREF1058_RS08320 - MotA/TolQ/ExbB proton channel family protein, at 1,193,300 to 1,194,016
_RS08320
HMPREF1058_RS08315: HMPREF1058_RS08315 - biopolymer transporter ExbD, at 1,194,023 to 1,194,442
_RS08315
Position (kb) 1192
1193
1194 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1191.591 kb on + strand at 1191.592 kb on - strand at 1191.592 kb on - strand at 1191.605 kb on - strand at 1192.489 kb on - strand at 1192.576 kb on - strand at 1192.598 kb on - strand at 1192.598 kb on - strand at 1192.603 kb on + strand at 1192.604 kb on - strand at 1192.610 kb on - strand at 1192.712 kb on - strand, within HMPREF1058_RS08325 at 1192.883 kb on + strand, within HMPREF1058_RS08325 at 1193.002 kb on + strand, within HMPREF1058_RS08325 at 1193.003 kb on - strand, within HMPREF1058_RS08325 at 1193.103 kb on - strand, within HMPREF1058_RS08325 at 1193.104 kb on + strand, within HMPREF1058_RS08325 at 1193.183 kb on + strand, within HMPREF1058_RS08325 at 1193.250 kb on + strand at 1193.250 kb on + strand at 1193.251 kb on - strand at 1193.270 kb on + strand at 1193.282 kb on + strand at 1193.472 kb on - strand, within HMPREF1058_RS08320 at 1193.530 kb on + strand, within HMPREF1058_RS08320 at 1193.549 kb on + strand, within HMPREF1058_RS08320 at 1193.581 kb on - strand, within HMPREF1058_RS08320 at 1193.585 kb on + strand, within HMPREF1058_RS08320 at 1193.635 kb on + strand, within HMPREF1058_RS08320 at 1193.694 kb on + strand, within HMPREF1058_RS08320 at 1193.694 kb on + strand, within HMPREF1058_RS08320 at 1193.695 kb on - strand, within HMPREF1058_RS08320 at 1193.695 kb on - strand, within HMPREF1058_RS08320 at 1193.855 kb on - strand, within HMPREF1058_RS08320 at 1193.872 kb on + strand, within HMPREF1058_RS08320 at 1193.925 kb on - strand, within HMPREF1058_RS08320 at 1193.925 kb on - strand, within HMPREF1058_RS08320 at 1194.014 kb on + strand at 1194.017 kb on + strand at 1194.056 kb on - strand at 1194.088 kb on - strand, within HMPREF1058_RS08315 at 1194.088 kb on - strand, within HMPREF1058_RS08315 at 1194.150 kb on + strand, within HMPREF1058_RS08315 at 1194.150 kb on + strand, within HMPREF1058_RS08315 at 1194.201 kb on + strand, within HMPREF1058_RS08315 at 1194.228 kb on - strand, within HMPREF1058_RS08315
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 1,191,591 + -0.8 1,191,592 - -0.3 1,191,592 - -0.5 1,191,605 - +0.2 1,192,489 - -0.4 1,192,576 - -0.9 1,192,598 - -2.4 1,192,598 - -3.7 1,192,603 + -0.8 1,192,604 - -2.4 1,192,610 - -1.7 1,192,712 - HMPREF1058_RS08325 0.17 -1.0 1,192,883 + HMPREF1058_RS08325 0.41 -1.5 1,193,002 + HMPREF1058_RS08325 0.58 -1.8 1,193,003 - HMPREF1058_RS08325 0.58 -3.2 1,193,103 - HMPREF1058_RS08325 0.72 -5.1 1,193,104 + HMPREF1058_RS08325 0.72 -1.1 1,193,183 + HMPREF1058_RS08325 0.83 -1.8 1,193,250 + -1.2 1,193,250 + -0.2 1,193,251 - -2.2 1,193,270 + -0.2 1,193,282 + -2.4 1,193,472 - HMPREF1058_RS08320 0.24 -0.6 1,193,530 + HMPREF1058_RS08320 0.32 +0.1 1,193,549 + HMPREF1058_RS08320 0.35 +0.1 1,193,581 - HMPREF1058_RS08320 0.39 -2.0 1,193,585 + HMPREF1058_RS08320 0.40 +0.1 1,193,635 + HMPREF1058_RS08320 0.47 +0.5 1,193,694 + HMPREF1058_RS08320 0.55 -0.1 1,193,694 + HMPREF1058_RS08320 0.55 +0.4 1,193,695 - HMPREF1058_RS08320 0.55 +0.2 1,193,695 - HMPREF1058_RS08320 0.55 -1.5 1,193,855 - HMPREF1058_RS08320 0.77 -2.2 1,193,872 + HMPREF1058_RS08320 0.80 -0.2 1,193,925 - HMPREF1058_RS08320 0.87 -0.6 1,193,925 - HMPREF1058_RS08320 0.87 -1.2 1,194,014 + -0.4 1,194,017 + -0.6 1,194,056 - -3.2 1,194,088 - HMPREF1058_RS08315 0.15 -1.3 1,194,088 - HMPREF1058_RS08315 0.15 -1.9 1,194,150 + HMPREF1058_RS08315 0.30 -1.3 1,194,150 + HMPREF1058_RS08315 0.30 -0.3 1,194,201 + HMPREF1058_RS08315 0.42 +0.4 1,194,228 - HMPREF1058_RS08315 0.49 -3.5
Or see this region's nucleotide sequence