Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07425

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07430 and HMPREF1058_RS07425 are separated by 19 nucleotidesHMPREF1058_RS07425 and HMPREF1058_RS07420 are separated by 132 nucleotides HMPREF1058_RS07430: HMPREF1058_RS07430 - TonB-dependent receptor, at 226,191 to 229,466 _RS07430 HMPREF1058_RS07425: HMPREF1058_RS07425 - SusD family outer membrane lipoprotein NanU, at 229,486 to 230,988 _RS07425 HMPREF1058_RS07420: HMPREF1058_RS07420 - exo-alpha-sialidase, at 231,121 to 232,761 _RS07420 Position (kb) 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 228.706 kb on - strand, within HMPREF1058_RS07430at 228.708 kb on - strand, within HMPREF1058_RS07430at 228.811 kb on - strand, within HMPREF1058_RS07430at 228.854 kb on - strand, within HMPREF1058_RS07430at 228.886 kb on + strand, within HMPREF1058_RS07430at 228.886 kb on + strand, within HMPREF1058_RS07430at 228.918 kb on - strand, within HMPREF1058_RS07430at 228.918 kb on - strand, within HMPREF1058_RS07430at 228.979 kb on - strand, within HMPREF1058_RS07430at 229.047 kb on + strand, within HMPREF1058_RS07430at 229.048 kb on - strand, within HMPREF1058_RS07430at 229.048 kb on - strand, within HMPREF1058_RS07430at 229.122 kb on - strand, within HMPREF1058_RS07430at 229.122 kb on - strand, within HMPREF1058_RS07430at 229.178 kb on + strandat 229.227 kb on + strandat 229.247 kb on - strandat 229.260 kb on - strandat 229.331 kb on - strandat 229.335 kb on + strandat 229.335 kb on + strandat 229.336 kb on - strandat 229.338 kb on - strandat 229.405 kb on + strandat 229.419 kb on + strandat 229.419 kb on + strandat 229.545 kb on + strandat 229.546 kb on - strandat 229.546 kb on - strandat 229.753 kb on + strand, within HMPREF1058_RS07425at 229.758 kb on + strand, within HMPREF1058_RS07425at 229.759 kb on - strand, within HMPREF1058_RS07425at 229.915 kb on + strand, within HMPREF1058_RS07425at 229.915 kb on + strand, within HMPREF1058_RS07425at 229.916 kb on - strand, within HMPREF1058_RS07425at 229.918 kb on + strand, within HMPREF1058_RS07425at 229.920 kb on + strand, within HMPREF1058_RS07425at 229.921 kb on - strand, within HMPREF1058_RS07425at 229.931 kb on + strand, within HMPREF1058_RS07425at 229.959 kb on + strand, within HMPREF1058_RS07425at 230.051 kb on + strand, within HMPREF1058_RS07425at 230.051 kb on + strand, within HMPREF1058_RS07425at 230.051 kb on + strand, within HMPREF1058_RS07425at 230.052 kb on - strand, within HMPREF1058_RS07425at 230.068 kb on + strand, within HMPREF1058_RS07425at 230.085 kb on + strand, within HMPREF1058_RS07425at 230.147 kb on + strand, within HMPREF1058_RS07425at 230.147 kb on + strand, within HMPREF1058_RS07425at 230.147 kb on + strand, within HMPREF1058_RS07425at 230.148 kb on - strand, within HMPREF1058_RS07425at 230.148 kb on - strand, within HMPREF1058_RS07425at 230.149 kb on + strand, within HMPREF1058_RS07425at 230.219 kb on + strand, within HMPREF1058_RS07425at 230.229 kb on + strand, within HMPREF1058_RS07425at 230.259 kb on + strand, within HMPREF1058_RS07425at 230.282 kb on - strand, within HMPREF1058_RS07425at 230.290 kb on - strand, within HMPREF1058_RS07425at 230.296 kb on - strand, within HMPREF1058_RS07425at 230.340 kb on + strand, within HMPREF1058_RS07425at 230.420 kb on + strand, within HMPREF1058_RS07425at 230.424 kb on + strand, within HMPREF1058_RS07425at 230.531 kb on + strand, within HMPREF1058_RS07425at 230.531 kb on + strand, within HMPREF1058_RS07425at 230.532 kb on - strand, within HMPREF1058_RS07425at 230.532 kb on - strand, within HMPREF1058_RS07425at 230.535 kb on + strand, within HMPREF1058_RS07425at 230.535 kb on + strand, within HMPREF1058_RS07425at 230.535 kb on + strand, within HMPREF1058_RS07425at 230.535 kb on + strand, within HMPREF1058_RS07425at 230.536 kb on - strand, within HMPREF1058_RS07425at 230.536 kb on - strand, within HMPREF1058_RS07425at 230.584 kb on - strand, within HMPREF1058_RS07425at 230.587 kb on + strand, within HMPREF1058_RS07425at 230.588 kb on - strand, within HMPREF1058_RS07425at 230.611 kb on - strand, within HMPREF1058_RS07425at 230.637 kb on + strand, within HMPREF1058_RS07425at 230.638 kb on - strand, within HMPREF1058_RS07425at 230.638 kb on - strand, within HMPREF1058_RS07425at 230.749 kb on + strand, within HMPREF1058_RS07425at 230.750 kb on - strand, within HMPREF1058_RS07425at 230.857 kb on + strandat 230.952 kb on + strandat 230.952 kb on + strandat 231.138 kb on - strandat 231.147 kb on - strandat 231.159 kb on + strandat 231.164 kb on + strandat 231.196 kb on - strandat 231.196 kb on - strandat 231.264 kb on - strandat 231.419 kb on - strandat 231.419 kb on - strand, within HMPREF1058_RS07420at 231.419 kb on - strand, within HMPREF1058_RS07420at 231.420 kb on + strand, within HMPREF1058_RS07420at 231.421 kb on - strand, within HMPREF1058_RS07420at 231.421 kb on - strand, within HMPREF1058_RS07420at 231.421 kb on - strand, within HMPREF1058_RS07420at 231.421 kb on - strand, within HMPREF1058_RS07420at 231.422 kb on + strand, within HMPREF1058_RS07420at 231.426 kb on + strand, within HMPREF1058_RS07420at 231.426 kb on + strandat 231.459 kb on + strand, within HMPREF1058_RS07420at 231.588 kb on + strand, within HMPREF1058_RS07420at 231.589 kb on - strand, within HMPREF1058_RS07420at 231.589 kb on - strand, within HMPREF1058_RS07420at 231.679 kb on + strand, within HMPREF1058_RS07420at 231.680 kb on - strand, within HMPREF1058_RS07420at 231.733 kb on - strand, within HMPREF1058_RS07420at 231.776 kb on + strand, within HMPREF1058_RS07420at 231.777 kb on - strand, within HMPREF1058_RS07420at 231.778 kb on + strand, within HMPREF1058_RS07420at 231.785 kb on + strand, within HMPREF1058_RS07420at 231.785 kb on + strand, within HMPREF1058_RS07420at 231.786 kb on - strand, within HMPREF1058_RS07420at 231.795 kb on + strand, within HMPREF1058_RS07420at 231.799 kb on - strand, within HMPREF1058_RS07420at 231.817 kb on + strand, within HMPREF1058_RS07420at 231.818 kb on - strand, within HMPREF1058_RS07420at 231.818 kb on - strand, within HMPREF1058_RS07420at 231.818 kb on - strand, within HMPREF1058_RS07420at 231.843 kb on + strand, within HMPREF1058_RS07420at 231.844 kb on - strand, within HMPREF1058_RS07420at 231.898 kb on + strand, within HMPREF1058_RS07420at 231.899 kb on - strandat 231.955 kb on - strand, within HMPREF1058_RS07420at 231.969 kb on + strand, within HMPREF1058_RS07420

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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228,706 - HMPREF1058_RS07430 0.77 -0.5
228,708 - HMPREF1058_RS07430 0.77 -0.6
228,811 - HMPREF1058_RS07430 0.80 +0.4
228,854 - HMPREF1058_RS07430 0.81 -0.4
228,886 + HMPREF1058_RS07430 0.82 -0.6
228,886 + HMPREF1058_RS07430 0.82 -1.5
228,918 - HMPREF1058_RS07430 0.83 -2.1
228,918 - HMPREF1058_RS07430 0.83 +1.0
228,979 - HMPREF1058_RS07430 0.85 -1.0
229,047 + HMPREF1058_RS07430 0.87 -1.7
229,048 - HMPREF1058_RS07430 0.87 -0.3
229,048 - HMPREF1058_RS07430 0.87 -1.9
229,122 - HMPREF1058_RS07430 0.89 -0.6
229,122 - HMPREF1058_RS07430 0.89 +0.5
229,178 + -2.2
229,227 + +2.0
229,247 - -1.5
229,260 - -1.5
229,331 - +0.6
229,335 + -2.1
229,335 + +0.4
229,336 - -1.3
229,338 - -0.2
229,405 + +0.7
229,419 + +0.5
229,419 + +0.1
229,545 + -0.1
229,546 - -1.7
229,546 - -2.4
229,753 + HMPREF1058_RS07425 0.18 -0.6
229,758 + HMPREF1058_RS07425 0.18 +1.0
229,759 - HMPREF1058_RS07425 0.18 -0.7
229,915 + HMPREF1058_RS07425 0.29 -1.1
229,915 + HMPREF1058_RS07425 0.29 -2.3
229,916 - HMPREF1058_RS07425 0.29 -0.4
229,918 + HMPREF1058_RS07425 0.29 -1.1
229,920 + HMPREF1058_RS07425 0.29 -1.1
229,921 - HMPREF1058_RS07425 0.29 -0.4
229,931 + HMPREF1058_RS07425 0.30 -1.1
229,959 + HMPREF1058_RS07425 0.31 -1.8
230,051 + HMPREF1058_RS07425 0.38 -1.1
230,051 + HMPREF1058_RS07425 0.38 -1.5
230,051 + HMPREF1058_RS07425 0.38 -1.3
230,052 - HMPREF1058_RS07425 0.38 -1.5
230,068 + HMPREF1058_RS07425 0.39 +0.4
230,085 + HMPREF1058_RS07425 0.40 -0.0
230,147 + HMPREF1058_RS07425 0.44 -2.1
230,147 + HMPREF1058_RS07425 0.44 -1.0
230,147 + HMPREF1058_RS07425 0.44 -0.3
230,148 - HMPREF1058_RS07425 0.44 -2.5
230,148 - HMPREF1058_RS07425 0.44 -1.1
230,149 + HMPREF1058_RS07425 0.44 -0.7
230,219 + HMPREF1058_RS07425 0.49 -2.0
230,229 + HMPREF1058_RS07425 0.49 -1.0
230,259 + HMPREF1058_RS07425 0.51 -0.5
230,282 - HMPREF1058_RS07425 0.53 -1.2
230,290 - HMPREF1058_RS07425 0.53 -1.4
230,296 - HMPREF1058_RS07425 0.54 -2.6
230,340 + HMPREF1058_RS07425 0.57 +0.5
230,420 + HMPREF1058_RS07425 0.62 +1.2
230,424 + HMPREF1058_RS07425 0.62 -1.0
230,531 + HMPREF1058_RS07425 0.70 -1.4
230,531 + HMPREF1058_RS07425 0.70 -0.0
230,532 - HMPREF1058_RS07425 0.70 -1.6
230,532 - HMPREF1058_RS07425 0.70 -0.3
230,535 + HMPREF1058_RS07425 0.70 -0.9
230,535 + HMPREF1058_RS07425 0.70 -0.8
230,535 + HMPREF1058_RS07425 0.70 -1.6
230,535 + HMPREF1058_RS07425 0.70 -3.0
230,536 - HMPREF1058_RS07425 0.70 -1.3
230,536 - HMPREF1058_RS07425 0.70 +1.7
230,584 - HMPREF1058_RS07425 0.73 -2.5
230,587 + HMPREF1058_RS07425 0.73 -1.8
230,588 - HMPREF1058_RS07425 0.73 -0.7
230,611 - HMPREF1058_RS07425 0.75 -1.5
230,637 + HMPREF1058_RS07425 0.77 -2.8
230,638 - HMPREF1058_RS07425 0.77 -0.8
230,638 - HMPREF1058_RS07425 0.77 -1.6
230,749 + HMPREF1058_RS07425 0.84 -3.4
230,750 - HMPREF1058_RS07425 0.84 -0.5
230,857 + -1.7
230,952 + -0.8
230,952 + -1.4
231,138 - -2.7
231,147 - -3.1
231,159 + -3.7
231,164 + -2.3
231,196 - -2.2
231,196 - -2.3
231,264 - -2.2
231,419 - -0.2
231,419 - HMPREF1058_RS07420 0.18 -4.6
231,419 - HMPREF1058_RS07420 0.18 -1.1
231,420 + HMPREF1058_RS07420 0.18 -3.1
231,421 - HMPREF1058_RS07420 0.18 -3.2
231,421 - HMPREF1058_RS07420 0.18 -1.9
231,421 - HMPREF1058_RS07420 0.18 -2.9
231,421 - HMPREF1058_RS07420 0.18 -2.0
231,422 + HMPREF1058_RS07420 0.18 -4.5
231,426 + HMPREF1058_RS07420 0.19 -3.2
231,426 + -0.3
231,459 + HMPREF1058_RS07420 0.21 -3.6
231,588 + HMPREF1058_RS07420 0.28 +0.4
231,589 - HMPREF1058_RS07420 0.29 -1.1
231,589 - HMPREF1058_RS07420 0.29 -3.0
231,679 + HMPREF1058_RS07420 0.34 -3.6
231,680 - HMPREF1058_RS07420 0.34 -3.0
231,733 - HMPREF1058_RS07420 0.37 -3.8
231,776 + HMPREF1058_RS07420 0.40 -2.1
231,777 - HMPREF1058_RS07420 0.40 -4.1
231,778 + HMPREF1058_RS07420 0.40 -0.3
231,785 + HMPREF1058_RS07420 0.40 -4.1
231,785 + HMPREF1058_RS07420 0.40 -3.4
231,786 - HMPREF1058_RS07420 0.41 +1.0
231,795 + HMPREF1058_RS07420 0.41 -4.0
231,799 - HMPREF1058_RS07420 0.41 +0.2
231,817 + HMPREF1058_RS07420 0.42 -3.7
231,818 - HMPREF1058_RS07420 0.42 -2.7
231,818 - HMPREF1058_RS07420 0.42 -4.1
231,818 - HMPREF1058_RS07420 0.42 -0.0
231,843 + HMPREF1058_RS07420 0.44 -1.9
231,844 - HMPREF1058_RS07420 0.44 -1.7
231,898 + HMPREF1058_RS07420 0.47 -3.7
231,899 - +0.7
231,955 - HMPREF1058_RS07420 0.51 +0.7
231,969 + HMPREF1058_RS07420 0.52 -3.9

Or see this region's nucleotide sequence