Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07425 and HMPREF1058_RS07420 are separated by 132 nucleotides HMPREF1058_RS07420 and HMPREF1058_RS07415 are separated by 3 nucleotides
HMPREF1058_RS07425: HMPREF1058_RS07425 - SusD family outer membrane lipoprotein NanU, at 229,486 to 230,988
_RS07425
HMPREF1058_RS07420: HMPREF1058_RS07420 - exo-alpha-sialidase, at 231,121 to 232,761
_RS07420
HMPREF1058_RS07415: HMPREF1058_RS07415 - family 20 glycosylhydrolase, at 232,765 to 234,771
_RS07415
Position (kb) 231
232
233 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 230.147 kb on + strand, within HMPREF1058_RS07425 at 230.147 kb on + strand, within HMPREF1058_RS07425 at 230.147 kb on + strand, within HMPREF1058_RS07425 at 230.148 kb on - strand, within HMPREF1058_RS07425 at 230.148 kb on - strand, within HMPREF1058_RS07425 at 230.149 kb on + strand, within HMPREF1058_RS07425 at 230.219 kb on + strand, within HMPREF1058_RS07425 at 230.229 kb on + strand, within HMPREF1058_RS07425 at 230.259 kb on + strand, within HMPREF1058_RS07425 at 230.282 kb on - strand, within HMPREF1058_RS07425 at 230.290 kb on - strand, within HMPREF1058_RS07425 at 230.296 kb on - strand, within HMPREF1058_RS07425 at 230.340 kb on + strand, within HMPREF1058_RS07425 at 230.420 kb on + strand, within HMPREF1058_RS07425 at 230.424 kb on + strand, within HMPREF1058_RS07425 at 230.531 kb on + strand, within HMPREF1058_RS07425 at 230.531 kb on + strand, within HMPREF1058_RS07425 at 230.532 kb on - strand, within HMPREF1058_RS07425 at 230.532 kb on - strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.536 kb on - strand, within HMPREF1058_RS07425 at 230.536 kb on - strand, within HMPREF1058_RS07425 at 230.584 kb on - strand, within HMPREF1058_RS07425 at 230.587 kb on + strand, within HMPREF1058_RS07425 at 230.588 kb on - strand, within HMPREF1058_RS07425 at 230.611 kb on - strand, within HMPREF1058_RS07425 at 230.637 kb on + strand, within HMPREF1058_RS07425 at 230.638 kb on - strand, within HMPREF1058_RS07425 at 230.638 kb on - strand, within HMPREF1058_RS07425 at 230.749 kb on + strand, within HMPREF1058_RS07425 at 230.750 kb on - strand, within HMPREF1058_RS07425 at 230.857 kb on + strand at 230.952 kb on + strand at 230.952 kb on + strand at 231.138 kb on - strand at 231.147 kb on - strand at 231.159 kb on + strand at 231.164 kb on + strand at 231.196 kb on - strand at 231.196 kb on - strand at 231.264 kb on - strand at 231.419 kb on - strand at 231.419 kb on - strand, within HMPREF1058_RS07420 at 231.419 kb on - strand, within HMPREF1058_RS07420 at 231.420 kb on + strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.422 kb on + strand, within HMPREF1058_RS07420 at 231.426 kb on + strand, within HMPREF1058_RS07420 at 231.426 kb on + strand at 231.459 kb on + strand, within HMPREF1058_RS07420 at 231.588 kb on + strand, within HMPREF1058_RS07420 at 231.589 kb on - strand, within HMPREF1058_RS07420 at 231.589 kb on - strand, within HMPREF1058_RS07420 at 231.679 kb on + strand, within HMPREF1058_RS07420 at 231.680 kb on - strand, within HMPREF1058_RS07420 at 231.733 kb on - strand, within HMPREF1058_RS07420 at 231.776 kb on + strand, within HMPREF1058_RS07420 at 231.777 kb on - strand, within HMPREF1058_RS07420 at 231.778 kb on + strand, within HMPREF1058_RS07420 at 231.785 kb on + strand, within HMPREF1058_RS07420 at 231.785 kb on + strand, within HMPREF1058_RS07420 at 231.786 kb on - strand, within HMPREF1058_RS07420 at 231.795 kb on + strand, within HMPREF1058_RS07420 at 231.799 kb on - strand, within HMPREF1058_RS07420 at 231.817 kb on + strand, within HMPREF1058_RS07420 at 231.818 kb on - strand, within HMPREF1058_RS07420 at 231.818 kb on - strand, within HMPREF1058_RS07420 at 231.818 kb on - strand, within HMPREF1058_RS07420 at 231.843 kb on + strand, within HMPREF1058_RS07420 at 231.844 kb on - strand, within HMPREF1058_RS07420 at 231.898 kb on + strand, within HMPREF1058_RS07420 at 231.899 kb on - strand at 231.955 kb on - strand, within HMPREF1058_RS07420 at 231.969 kb on + strand, within HMPREF1058_RS07420 at 232.053 kb on + strand, within HMPREF1058_RS07420 at 232.053 kb on + strand, within HMPREF1058_RS07420 at 232.116 kb on + strand, within HMPREF1058_RS07420 at 232.147 kb on + strand, within HMPREF1058_RS07420 at 232.170 kb on + strand, within HMPREF1058_RS07420 at 232.176 kb on + strand, within HMPREF1058_RS07420 at 232.176 kb on + strand, within HMPREF1058_RS07420 at 232.177 kb on - strand, within HMPREF1058_RS07420 at 232.182 kb on + strand, within HMPREF1058_RS07420 at 232.218 kb on + strand, within HMPREF1058_RS07420 at 232.239 kb on + strand, within HMPREF1058_RS07420 at 232.240 kb on - strand, within HMPREF1058_RS07420 at 232.251 kb on + strand, within HMPREF1058_RS07420 at 232.252 kb on - strand, within HMPREF1058_RS07420 at 232.252 kb on - strand, within HMPREF1058_RS07420 at 232.252 kb on - strand, within HMPREF1058_RS07420 at 232.253 kb on + strand, within HMPREF1058_RS07420 at 232.253 kb on + strand, within HMPREF1058_RS07420 at 232.254 kb on - strand, within HMPREF1058_RS07420 at 232.254 kb on - strand, within HMPREF1058_RS07420 at 232.291 kb on - strand, within HMPREF1058_RS07420 at 232.308 kb on + strand, within HMPREF1058_RS07420 at 232.309 kb on - strand, within HMPREF1058_RS07420 at 232.409 kb on + strand, within HMPREF1058_RS07420 at 232.443 kb on + strand, within HMPREF1058_RS07420 at 232.561 kb on - strand, within HMPREF1058_RS07420 at 232.561 kb on - strand, within HMPREF1058_RS07420 at 232.663 kb on - strand at 232.663 kb on - strand at 232.746 kb on + strand at 232.746 kb on + strand at 232.747 kb on - strand at 232.799 kb on + strand at 232.814 kb on + strand at 232.815 kb on - strand at 232.815 kb on - strand at 232.818 kb on + strand at 232.819 kb on - strand at 232.861 kb on + strand at 233.079 kb on - strand, within HMPREF1058_RS07415 at 233.088 kb on - strand, within HMPREF1058_RS07415 at 233.112 kb on + strand, within HMPREF1058_RS07415 at 233.395 kb on + strand, within HMPREF1058_RS07415 at 233.395 kb on + strand, within HMPREF1058_RS07415 at 233.396 kb on - strand, within HMPREF1058_RS07415 at 233.473 kb on - strand, within HMPREF1058_RS07415 at 233.484 kb on + strand, within HMPREF1058_RS07415 at 233.518 kb on - strand, within HMPREF1058_RS07415 at 233.594 kb on + strand, within HMPREF1058_RS07415 at 233.595 kb on - strand, within HMPREF1058_RS07415 at 233.595 kb on - strand, within HMPREF1058_RS07415 at 233.599 kb on - strand, within HMPREF1058_RS07415 at 233.599 kb on - strand, within HMPREF1058_RS07415 at 233.600 kb on + strand, within HMPREF1058_RS07415 at 233.600 kb on + strand, within HMPREF1058_RS07415 at 233.600 kb on + strand, within HMPREF1058_RS07415 at 233.600 kb on + strand, within HMPREF1058_RS07415 at 233.600 kb on + strand, within HMPREF1058_RS07415 at 233.601 kb on - strand, within HMPREF1058_RS07415 at 233.605 kb on - strand, within HMPREF1058_RS07415 at 233.657 kb on - strand, within HMPREF1058_RS07415 at 233.657 kb on - strand, within HMPREF1058_RS07415 at 233.657 kb on - strand, within HMPREF1058_RS07415 at 233.657 kb on - strand, within HMPREF1058_RS07415 at 233.688 kb on + strand, within HMPREF1058_RS07415 at 233.747 kb on - strand, within HMPREF1058_RS07415
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 230,147 + HMPREF1058_RS07425 0.44 -2.1 230,147 + HMPREF1058_RS07425 0.44 -1.0 230,147 + HMPREF1058_RS07425 0.44 -0.3 230,148 - HMPREF1058_RS07425 0.44 -2.5 230,148 - HMPREF1058_RS07425 0.44 -1.1 230,149 + HMPREF1058_RS07425 0.44 -0.7 230,219 + HMPREF1058_RS07425 0.49 -2.0 230,229 + HMPREF1058_RS07425 0.49 -1.0 230,259 + HMPREF1058_RS07425 0.51 -0.5 230,282 - HMPREF1058_RS07425 0.53 -1.2 230,290 - HMPREF1058_RS07425 0.53 -1.4 230,296 - HMPREF1058_RS07425 0.54 -2.6 230,340 + HMPREF1058_RS07425 0.57 +0.5 230,420 + HMPREF1058_RS07425 0.62 +1.2 230,424 + HMPREF1058_RS07425 0.62 -1.0 230,531 + HMPREF1058_RS07425 0.70 -1.4 230,531 + HMPREF1058_RS07425 0.70 -0.0 230,532 - HMPREF1058_RS07425 0.70 -1.6 230,532 - HMPREF1058_RS07425 0.70 -0.3 230,535 + HMPREF1058_RS07425 0.70 -0.9 230,535 + HMPREF1058_RS07425 0.70 -0.8 230,535 + HMPREF1058_RS07425 0.70 -1.6 230,535 + HMPREF1058_RS07425 0.70 -3.0 230,536 - HMPREF1058_RS07425 0.70 -1.3 230,536 - HMPREF1058_RS07425 0.70 +1.7 230,584 - HMPREF1058_RS07425 0.73 -2.5 230,587 + HMPREF1058_RS07425 0.73 -1.8 230,588 - HMPREF1058_RS07425 0.73 -0.7 230,611 - HMPREF1058_RS07425 0.75 -1.5 230,637 + HMPREF1058_RS07425 0.77 -2.8 230,638 - HMPREF1058_RS07425 0.77 -0.8 230,638 - HMPREF1058_RS07425 0.77 -1.6 230,749 + HMPREF1058_RS07425 0.84 -3.4 230,750 - HMPREF1058_RS07425 0.84 -0.5 230,857 + -1.7 230,952 + -0.8 230,952 + -1.4 231,138 - -2.7 231,147 - -3.1 231,159 + -3.7 231,164 + -2.3 231,196 - -2.2 231,196 - -2.3 231,264 - -2.2 231,419 - -0.2 231,419 - HMPREF1058_RS07420 0.18 -4.6 231,419 - HMPREF1058_RS07420 0.18 -1.1 231,420 + HMPREF1058_RS07420 0.18 -3.1 231,421 - HMPREF1058_RS07420 0.18 -3.2 231,421 - HMPREF1058_RS07420 0.18 -1.9 231,421 - HMPREF1058_RS07420 0.18 -2.9 231,421 - HMPREF1058_RS07420 0.18 -2.0 231,422 + HMPREF1058_RS07420 0.18 -4.5 231,426 + HMPREF1058_RS07420 0.19 -3.2 231,426 + -0.3 231,459 + HMPREF1058_RS07420 0.21 -3.6 231,588 + HMPREF1058_RS07420 0.28 +0.4 231,589 - HMPREF1058_RS07420 0.29 -1.1 231,589 - HMPREF1058_RS07420 0.29 -3.0 231,679 + HMPREF1058_RS07420 0.34 -3.6 231,680 - HMPREF1058_RS07420 0.34 -3.0 231,733 - HMPREF1058_RS07420 0.37 -3.8 231,776 + HMPREF1058_RS07420 0.40 -2.1 231,777 - HMPREF1058_RS07420 0.40 -4.1 231,778 + HMPREF1058_RS07420 0.40 -0.3 231,785 + HMPREF1058_RS07420 0.40 -4.1 231,785 + HMPREF1058_RS07420 0.40 -3.4 231,786 - HMPREF1058_RS07420 0.41 +1.0 231,795 + HMPREF1058_RS07420 0.41 -4.0 231,799 - HMPREF1058_RS07420 0.41 +0.2 231,817 + HMPREF1058_RS07420 0.42 -3.7 231,818 - HMPREF1058_RS07420 0.42 -2.7 231,818 - HMPREF1058_RS07420 0.42 -4.1 231,818 - HMPREF1058_RS07420 0.42 -0.0 231,843 + HMPREF1058_RS07420 0.44 -1.9 231,844 - HMPREF1058_RS07420 0.44 -1.7 231,898 + HMPREF1058_RS07420 0.47 -3.7 231,899 - +0.7 231,955 - HMPREF1058_RS07420 0.51 +0.7 231,969 + HMPREF1058_RS07420 0.52 -3.9 232,053 + HMPREF1058_RS07420 0.57 -3.4 232,053 + HMPREF1058_RS07420 0.57 +0.7 232,116 + HMPREF1058_RS07420 0.61 -3.6 232,147 + HMPREF1058_RS07420 0.63 -3.4 232,170 + HMPREF1058_RS07420 0.64 -3.3 232,176 + HMPREF1058_RS07420 0.64 -4.3 232,176 + HMPREF1058_RS07420 0.64 -3.0 232,177 - HMPREF1058_RS07420 0.64 -0.2 232,182 + HMPREF1058_RS07420 0.65 -4.2 232,218 + HMPREF1058_RS07420 0.67 -4.0 232,239 + HMPREF1058_RS07420 0.68 -2.1 232,240 - HMPREF1058_RS07420 0.68 -0.5 232,251 + HMPREF1058_RS07420 0.69 -1.9 232,252 - HMPREF1058_RS07420 0.69 -1.8 232,252 - HMPREF1058_RS07420 0.69 -1.3 232,252 - HMPREF1058_RS07420 0.69 -3.0 232,253 + HMPREF1058_RS07420 0.69 -1.5 232,253 + HMPREF1058_RS07420 0.69 -0.9 232,254 - HMPREF1058_RS07420 0.69 -4.4 232,254 - HMPREF1058_RS07420 0.69 -3.3 232,291 - HMPREF1058_RS07420 0.71 -0.2 232,308 + HMPREF1058_RS07420 0.72 -3.7 232,309 - HMPREF1058_RS07420 0.72 -3.1 232,409 + HMPREF1058_RS07420 0.78 -3.1 232,443 + HMPREF1058_RS07420 0.81 -1.5 232,561 - HMPREF1058_RS07420 0.88 -1.2 232,561 - HMPREF1058_RS07420 0.88 -1.2 232,663 - -0.6 232,663 - -3.5 232,746 + -1.2 232,746 + +0.0 232,747 - -4.2 232,799 + +1.4 232,814 + -0.4 232,815 - -0.8 232,815 - +1.4 232,818 + -0.3 232,819 - +1.0 232,861 + +0.5 233,079 - HMPREF1058_RS07415 0.16 -0.6 233,088 - HMPREF1058_RS07415 0.16 +0.1 233,112 + HMPREF1058_RS07415 0.17 +0.0 233,395 + HMPREF1058_RS07415 0.31 -0.4 233,395 + HMPREF1058_RS07415 0.31 +0.5 233,396 - HMPREF1058_RS07415 0.31 -0.3 233,473 - HMPREF1058_RS07415 0.35 -0.2 233,484 + HMPREF1058_RS07415 0.36 -0.6 233,518 - HMPREF1058_RS07415 0.38 -0.1 233,594 + HMPREF1058_RS07415 0.41 +1.0 233,595 - HMPREF1058_RS07415 0.41 -0.3 233,595 - HMPREF1058_RS07415 0.41 +0.1 233,599 - HMPREF1058_RS07415 0.42 +0.1 233,599 - HMPREF1058_RS07415 0.42 -0.7 233,600 + HMPREF1058_RS07415 0.42 +0.7 233,600 + HMPREF1058_RS07415 0.42 -0.3 233,600 + HMPREF1058_RS07415 0.42 +0.6 233,600 + HMPREF1058_RS07415 0.42 +0.5 233,600 + HMPREF1058_RS07415 0.42 +3.0 233,601 - HMPREF1058_RS07415 0.42 -0.8 233,605 - HMPREF1058_RS07415 0.42 +0.6 233,657 - HMPREF1058_RS07415 0.44 -1.0 233,657 - HMPREF1058_RS07415 0.44 -0.7 233,657 - HMPREF1058_RS07415 0.44 +1.4 233,657 - HMPREF1058_RS07415 0.44 +0.6 233,688 + HMPREF1058_RS07415 0.46 -1.3 233,747 - HMPREF1058_RS07415 0.49 -2.1
Or see this region's nucleotide sequence