Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05805

Experiment: FSL 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	FSL 10 mg/mL (C)
73,582	-		HMPREF1058_RS05810	0.38	+1.0
73,599	-		HMPREF1058_RS05810	0.39	+0.1
73,616	+		HMPREF1058_RS05810	0.40	-0.3
73,656	+		HMPREF1058_RS05810	0.44	+1.1
73,660	-		HMPREF1058_RS05810	0.44	+0.5
73,660	-		HMPREF1058_RS05810	0.44	+0.2
73,679	+		HMPREF1058_RS05810	0.46	-0.9
73,680	-		HMPREF1058_RS05810	0.46	-0.3
73,718	+		HMPREF1058_RS05810	0.49	-0.6
73,718	+		HMPREF1058_RS05810	0.49	+0.3
73,821	-		HMPREF1058_RS05810	0.57	+0.1
73,827	-		HMPREF1058_RS05810	0.58	-0.2
73,847	+		HMPREF1058_RS05810	0.59	-0.7
73,847	+		HMPREF1058_RS05810	0.59	-0.9
73,848	-		HMPREF1058_RS05810	0.60	-0.2
73,848	-		HMPREF1058_RS05810	0.60	+1.0
73,848	-		HMPREF1058_RS05810	0.60	+0.1
73,947	-		HMPREF1058_RS05810	0.68	+0.8
73,949	+		HMPREF1058_RS05810	0.68	+0.0
73,949	+		HMPREF1058_RS05810	0.68	+0.2
74,013	-		HMPREF1058_RS05810	0.73	+0.4
74,048	+		HMPREF1058_RS05810	0.76	+2.3
74,077	+		HMPREF1058_RS05810	0.78	+1.1
74,077	+		HMPREF1058_RS05810	0.78	+0.1
74,248	-				-0.5
74,248	-				+0.5
74,298	-				-0.2
74,298	-				-0.8
74,299	+				-0.6
74,313	-				+0.5
74,390	-				+1.2
74,398	-				-0.4
74,458	-				-2.3
74,509	+				-0.3
74,578	+				+1.5
74,579	-				+2.3
74,607	-				+0.1
74,664	-				+0.4
74,686	+				-0.1
74,708	-				+0.7
74,711	-				-1.1
74,765	+		HMPREF1058_RS05805	0.11	-2.0
74,766	-		HMPREF1058_RS05805	0.11	-0.6
74,766	-		HMPREF1058_RS05805	0.11	-1.2
74,766	-		HMPREF1058_RS05805	0.11	+0.0
74,769	-		HMPREF1058_RS05805	0.11	-1.8
74,873	-		HMPREF1058_RS05805	0.15	-0.9
74,924	+		HMPREF1058_RS05805	0.17	-2.5
74,925	-		HMPREF1058_RS05805	0.17	-1.2
74,925	-		HMPREF1058_RS05805	0.17	-0.8
74,977	+		HMPREF1058_RS05805	0.20	-2.1
74,984	+		HMPREF1058_RS05805	0.20	-1.4
74,985	-		HMPREF1058_RS05805	0.20	-0.1
75,307	+		HMPREF1058_RS05805	0.34	-4.3
75,332	-		HMPREF1058_RS05805	0.35	-0.9
75,406	+		HMPREF1058_RS05805	0.38	-1.3
75,579	-		HMPREF1058_RS05805	0.46	-0.3
75,703	+		HMPREF1058_RS05805	0.51	-1.6
75,772	+		HMPREF1058_RS05805	0.54	-0.7
75,909	-		HMPREF1058_RS05805	0.60	-1.2
75,938	-		HMPREF1058_RS05805	0.62	-0.5
75,971	-		HMPREF1058_RS05805	0.63	+1.7
76,018	+		HMPREF1058_RS05805	0.65	-0.5
76,018	+		HMPREF1058_RS05805	0.65	-0.9
76,123	+		HMPREF1058_RS05805	0.70	-1.2
76,124	-		HMPREF1058_RS05805	0.70	-1.9
76,181	+		HMPREF1058_RS05805	0.72	-0.3
76,219	+		HMPREF1058_RS05805	0.74	+2.0
76,253	+		HMPREF1058_RS05805	0.75	-0.4
76,261	+				+0.2
76,279	+		HMPREF1058_RS05805	0.76	-0.9
76,462	-		HMPREF1058_RS05805	0.84	-0.9
76,557	-		HMPREF1058_RS05805	0.89	-0.6
76,557	-		HMPREF1058_RS05805	0.89	-1.4
76,557	-		HMPREF1058_RS05805	0.89	-0.6
76,712	+				-2.3
76,749	-				+0.0
76,749	-				-1.4
76,818	+				-0.6
76,819	-				-0.2
76,879	+				-0.7
76,926	-				-0.8
76,927	+				-0.1
76,927	+				+1.1
76,928	-				+0.7
76,933	+				-0.5
76,955	+				-0.8
76,955	+				+0.1
76,955	+				-0.4
76,955	+				+0.4
76,956	-				-1.5
76,956	-				+0.5
76,956	-				+0.2
76,956	-				+0.1
76,977	+				+1.0
77,046	+				+0.7
77,047	-				-0.1
77,054	+				-1.0
77,055	-				+1.2
77,144	-				+0.3
77,157	-				+0.0
77,194	-				+1.0
77,210	-				-1.6
77,256	+				+0.2
77,277	+				-0.5
77,278	-				+0.6
77,323	-				-0.1
77,414	-		HMPREF1058_RS05800	0.24	+1.0
77,415	+		HMPREF1058_RS05800	0.24	-0.3
77,423	-		HMPREF1058_RS05800	0.25	-1.2
77,527	+		HMPREF1058_RS05800	0.38	-0.6
77,813	+		HMPREF1058_RS05800	0.75	+0.3