Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02755

Experiment: FSL 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	FSL 10 mg/mL (C)
100,936	-		HMPREF1058_RS02760	0.75	+0.2
100,937	+		HMPREF1058_RS02760	0.75	-1.3
100,938	-		HMPREF1058_RS02760	0.75	-0.8
100,991	-		HMPREF1058_RS02760	0.81	-0.9
100,992	+		HMPREF1058_RS02760	0.81	+0.3
101,124	-				+0.1
101,127	-				+0.3
101,197	+				-0.7
101,251	+				-0.5
101,320	-				+1.9
101,425	-				-0.1
101,475	+				-0.5
101,556	+				-0.4
101,561	+				+0.3
101,711	-				+1.1
101,711	-				+0.4
101,926	+				-0.2
101,932	+				-0.2
101,983	+				-0.5
102,068	-				-0.8
102,092	+				+0.7
102,201	-				-0.2
102,523	-		HMPREF1058_RS02755	0.14	+0.2
102,680	+		HMPREF1058_RS02755	0.18	+1.2
102,680	+		HMPREF1058_RS02755	0.18	+1.4
102,692	-		HMPREF1058_RS02755	0.18	-0.5
102,897	-		HMPREF1058_RS02755	0.22	-0.2
103,287	-		HMPREF1058_RS02755	0.31	-0.5
103,287	-		HMPREF1058_RS02755	0.31	-0.0
103,389	+				-0.0
104,036	+		HMPREF1058_RS02755	0.47	-0.6
104,086	+		HMPREF1058_RS02755	0.48	-0.5
104,143	-		HMPREF1058_RS02755	0.49	+1.0
104,203	-		HMPREF1058_RS02755	0.50	+1.4
104,203	-		HMPREF1058_RS02755	0.50	-1.1
104,257	+		HMPREF1058_RS02755	0.52	-0.3
104,257	+		HMPREF1058_RS02755	0.52	-0.6
104,414	-		HMPREF1058_RS02755	0.55	+0.4
104,415	+		HMPREF1058_RS02755	0.55	-0.3
104,415	+		HMPREF1058_RS02755	0.55	+1.7
104,417	+		HMPREF1058_RS02755	0.55	-0.2
104,418	-		HMPREF1058_RS02755	0.55	-0.5
104,489	-		HMPREF1058_RS02755	0.57	+0.4
104,522	+		HMPREF1058_RS02755	0.57	+0.7
104,599	-		HMPREF1058_RS02755	0.59	-0.3
104,731	-		HMPREF1058_RS02755	0.62	-1.0
104,732	+		HMPREF1058_RS02755	0.62	-2.0
104,749	-		HMPREF1058_RS02755	0.62	-0.0
104,871	+		HMPREF1058_RS02755	0.65	-0.5
104,872	-		HMPREF1058_RS02755	0.65	+2.0
104,872	-		HMPREF1058_RS02755	0.65	-0.2
104,960	-		HMPREF1058_RS02755	0.67	-0.0
105,421	+		HMPREF1058_RS02755	0.77	-1.5
105,444	+		HMPREF1058_RS02755	0.77	+2.0
105,590	+		HMPREF1058_RS02755	0.80	-0.2
105,643	-		HMPREF1058_RS02755	0.81	-0.4
106,060	-				+1.4
106,424	-				-0.2
106,493	+				-0.3
106,493	+				-2.0
106,539	+				+0.7
106,539	+				+0.3
106,551	+				-0.8
106,552	-				-0.0
106,591	+				-0.6
106,620	+				+0.4
106,622	+				+0.2
106,721	-				+1.0
106,860	-				-0.3
106,860	-		HMPREF1058_RS02750	0.15	-1.1
107,082	-		HMPREF1058_RS02750	0.24	-0.6
107,297	+		HMPREF1058_RS02750	0.34	-1.7
107,299	+		HMPREF1058_RS02750	0.34	-2.5
107,309	-		HMPREF1058_RS02750	0.34	+3.0
107,309	-		HMPREF1058_RS02750	0.34	-0.3
107,309	-		HMPREF1058_RS02750	0.34	+0.7
107,319	-		HMPREF1058_RS02750	0.35	-1.9
107,386	+		HMPREF1058_RS02750	0.37	-0.9