Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02220

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02230 and HMPREF1058_RS02225 are separated by 8 nucleotidesHMPREF1058_RS02225 and HMPREF1058_RS02220 are separated by 180 nucleotidesHMPREF1058_RS02220 and HMPREF1058_RS0120025 are separated by 17 nucleotidesHMPREF1058_RS0120025 and HMPREF1058_RS02215 are separated by 122 nucleotides HMPREF1058_RS02230: HMPREF1058_RS02230 - exodeoxyribonuclease VII large subunit, at 252,673 to 253,980 _RS02230 HMPREF1058_RS02225: HMPREF1058_RS02225 - exodeoxyribonuclease VII small subunit, at 253,989 to 254,192 _RS02225 HMPREF1058_RS02220: HMPREF1058_RS02220 - branched-chain amino acid aminotransferase, at 254,373 to 255,392 _RS02220 HMPREF1058_RS0120025: HMPREF1058_RS0120025 - DUF975 family protein, at 255,410 to 256,035 _RS0120025 HMPREF1058_RS02215: HMPREF1058_RS02215 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 256,158 to 256,916 _RS02215 Position (kb) 254 255 256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 253.373 kb on - strand, within HMPREF1058_RS02230at 253.373 kb on - strand, within HMPREF1058_RS02230at 253.407 kb on - strand, within HMPREF1058_RS02230at 253.410 kb on + strand, within HMPREF1058_RS02230at 253.410 kb on + strand, within HMPREF1058_RS02230at 253.410 kb on + strand, within HMPREF1058_RS02230at 253.414 kb on - strand, within HMPREF1058_RS02230at 253.425 kb on + strand, within HMPREF1058_RS02230at 253.486 kb on - strand, within HMPREF1058_RS02230at 253.507 kb on - strand, within HMPREF1058_RS02230at 253.508 kb on + strand, within HMPREF1058_RS02230at 253.569 kb on + strand, within HMPREF1058_RS02230at 253.570 kb on - strand, within HMPREF1058_RS02230at 253.570 kb on - strand, within HMPREF1058_RS02230at 253.616 kb on + strandat 253.617 kb on - strand, within HMPREF1058_RS02230at 253.617 kb on - strand, within HMPREF1058_RS02230at 253.617 kb on - strand, within HMPREF1058_RS02230at 253.697 kb on + strand, within HMPREF1058_RS02230at 253.697 kb on + strand, within HMPREF1058_RS02230at 253.863 kb on + strandat 253.864 kb on - strandat 253.864 kb on - strandat 253.867 kb on - strandat 253.963 kb on - strandat 253.964 kb on + strandat 253.965 kb on - strandat 253.965 kb on - strandat 254.010 kb on + strand, within HMPREF1058_RS02225at 254.054 kb on - strand, within HMPREF1058_RS02225at 254.054 kb on - strand, within HMPREF1058_RS02225at 254.060 kb on + strand, within HMPREF1058_RS02225at 254.225 kb on - strandat 254.263 kb on - strandat 254.319 kb on + strandat 254.367 kb on - strandat 254.372 kb on + strandat 254.372 kb on + strandat 254.410 kb on - strandat 254.424 kb on + strandat 254.425 kb on - strandat 254.425 kb on - strandat 254.426 kb on + strandat 254.431 kb on + strandat 254.431 kb on + strandat 254.431 kb on + strandat 254.431 kb on + strandat 254.573 kb on + strand, within HMPREF1058_RS02220at 254.622 kb on - strand, within HMPREF1058_RS02220at 254.740 kb on - strandat 254.763 kb on - strand, within HMPREF1058_RS02220at 254.800 kb on - strand, within HMPREF1058_RS02220at 254.870 kb on + strand, within HMPREF1058_RS02220at 254.935 kb on - strand, within HMPREF1058_RS02220at 254.935 kb on - strand, within HMPREF1058_RS02220at 254.994 kb on + strand, within HMPREF1058_RS02220at 255.041 kb on + strand, within HMPREF1058_RS02220at 255.069 kb on + strand, within HMPREF1058_RS02220at 255.105 kb on - strand, within HMPREF1058_RS02220at 255.105 kb on - strand, within HMPREF1058_RS02220at 255.278 kb on + strand, within HMPREF1058_RS02220at 255.285 kb on - strand, within HMPREF1058_RS02220at 255.339 kb on - strandat 255.345 kb on + strandat 255.362 kb on + strandat 255.362 kb on + strandat 255.369 kb on - strandat 255.386 kb on - strandat 255.393 kb on + strandat 255.402 kb on - strandat 255.484 kb on + strand, within HMPREF1058_RS0120025at 255.635 kb on + strand, within HMPREF1058_RS0120025at 255.669 kb on + strand, within HMPREF1058_RS0120025at 255.693 kb on + strand, within HMPREF1058_RS0120025at 255.715 kb on + strand, within HMPREF1058_RS0120025at 255.716 kb on - strand, within HMPREF1058_RS0120025at 255.716 kb on - strand, within HMPREF1058_RS0120025at 255.717 kb on + strand, within HMPREF1058_RS0120025at 255.717 kb on + strand, within HMPREF1058_RS0120025at 255.766 kb on + strand, within HMPREF1058_RS0120025at 255.830 kb on + strand, within HMPREF1058_RS0120025at 255.956 kb on - strand, within HMPREF1058_RS0120025at 255.956 kb on - strand, within HMPREF1058_RS0120025at 255.960 kb on - strand, within HMPREF1058_RS0120025at 255.960 kb on - strand, within HMPREF1058_RS0120025at 255.960 kb on - strand, within HMPREF1058_RS0120025at 255.960 kb on - strand, within HMPREF1058_RS0120025at 255.983 kb on - strandat 256.034 kb on - strandat 256.036 kb on + strandat 256.037 kb on - strandat 256.039 kb on - strandat 256.039 kb on - strandat 256.145 kb on + strandat 256.191 kb on - strandat 256.218 kb on + strandat 256.244 kb on + strand, within HMPREF1058_RS02215at 256.244 kb on + strand, within HMPREF1058_RS02215at 256.335 kb on - strand, within HMPREF1058_RS02215at 256.352 kb on + strand, within HMPREF1058_RS02215at 256.352 kb on + strand, within HMPREF1058_RS02215at 256.352 kb on + strand, within HMPREF1058_RS02215at 256.382 kb on - strand, within HMPREF1058_RS02215at 256.385 kb on + strand, within HMPREF1058_RS02215

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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253,373 - HMPREF1058_RS02230 0.54 -1.3
253,373 - HMPREF1058_RS02230 0.54 +0.3
253,407 - HMPREF1058_RS02230 0.56 -0.1
253,410 + HMPREF1058_RS02230 0.56 -0.6
253,410 + HMPREF1058_RS02230 0.56 +0.1
253,410 + HMPREF1058_RS02230 0.56 +0.4
253,414 - HMPREF1058_RS02230 0.57 -0.2
253,425 + HMPREF1058_RS02230 0.57 -0.9
253,486 - HMPREF1058_RS02230 0.62 +0.2
253,507 - HMPREF1058_RS02230 0.64 -0.7
253,508 + HMPREF1058_RS02230 0.64 +3.0
253,569 + HMPREF1058_RS02230 0.69 -0.7
253,570 - HMPREF1058_RS02230 0.69 +0.5
253,570 - HMPREF1058_RS02230 0.69 -0.3
253,616 + +1.8
253,617 - HMPREF1058_RS02230 0.72 -1.4
253,617 - HMPREF1058_RS02230 0.72 +0.3
253,617 - HMPREF1058_RS02230 0.72 -1.3
253,697 + HMPREF1058_RS02230 0.78 +1.7
253,697 + HMPREF1058_RS02230 0.78 +1.4
253,863 + -0.6
253,864 - +0.1
253,864 - +0.8
253,867 - +0.2
253,963 - -0.2
253,964 + +0.8
253,965 - -1.1
253,965 - +1.8
254,010 + HMPREF1058_RS02225 0.10 +0.2
254,054 - HMPREF1058_RS02225 0.32 -0.8
254,054 - HMPREF1058_RS02225 0.32 -0.3
254,060 + HMPREF1058_RS02225 0.35 -0.3
254,225 - -1.6
254,263 - -0.0
254,319 + -0.8
254,367 - -0.6
254,372 + -1.1
254,372 + -3.5
254,410 - -2.1
254,424 + -3.7
254,425 - -1.9
254,425 - -2.7
254,426 + -2.1
254,431 + -3.7
254,431 + -3.8
254,431 + -2.6
254,431 + -3.5
254,573 + HMPREF1058_RS02220 0.20 -3.8
254,622 - HMPREF1058_RS02220 0.24 +0.7
254,740 - -0.6
254,763 - HMPREF1058_RS02220 0.38 -1.6
254,800 - HMPREF1058_RS02220 0.42 -1.5
254,870 + HMPREF1058_RS02220 0.49 -1.5
254,935 - HMPREF1058_RS02220 0.55 -3.8
254,935 - HMPREF1058_RS02220 0.55 -2.7
254,994 + HMPREF1058_RS02220 0.61 -1.4
255,041 + HMPREF1058_RS02220 0.65 -1.0
255,069 + HMPREF1058_RS02220 0.68 -3.1
255,105 - HMPREF1058_RS02220 0.72 -1.3
255,105 - HMPREF1058_RS02220 0.72 -1.5
255,278 + HMPREF1058_RS02220 0.89 -3.3
255,285 - HMPREF1058_RS02220 0.89 -2.0
255,339 - -1.1
255,345 + -1.0
255,362 + -2.1
255,362 + -3.2
255,369 - -2.5
255,386 - -2.2
255,393 + -0.6
255,402 - -0.3
255,484 + HMPREF1058_RS0120025 0.12 +0.2
255,635 + HMPREF1058_RS0120025 0.36 +0.3
255,669 + HMPREF1058_RS0120025 0.41 +0.7
255,693 + HMPREF1058_RS0120025 0.45 -0.3
255,715 + HMPREF1058_RS0120025 0.49 -1.0
255,716 - HMPREF1058_RS0120025 0.49 -0.0
255,716 - HMPREF1058_RS0120025 0.49 +0.2
255,717 + HMPREF1058_RS0120025 0.49 -0.7
255,717 + HMPREF1058_RS0120025 0.49 -0.1
255,766 + HMPREF1058_RS0120025 0.57 +0.6
255,830 + HMPREF1058_RS0120025 0.67 -0.6
255,956 - HMPREF1058_RS0120025 0.87 -1.2
255,956 - HMPREF1058_RS0120025 0.87 -0.0
255,960 - HMPREF1058_RS0120025 0.88 -1.2
255,960 - HMPREF1058_RS0120025 0.88 -1.3
255,960 - HMPREF1058_RS0120025 0.88 +0.4
255,960 - HMPREF1058_RS0120025 0.88 -2.3
255,983 - -0.4
256,034 - +0.9
256,036 + +0.7
256,037 - +1.5
256,039 - -0.3
256,039 - -0.1
256,145 + -0.6
256,191 - +0.8
256,218 + +0.0
256,244 + HMPREF1058_RS02215 0.11 -0.5
256,244 + HMPREF1058_RS02215 0.11 +0.6
256,335 - HMPREF1058_RS02215 0.23 -1.0
256,352 + HMPREF1058_RS02215 0.26 +0.6
256,352 + HMPREF1058_RS02215 0.26 +0.7
256,352 + HMPREF1058_RS02215 0.26 +1.1
256,382 - HMPREF1058_RS02215 0.30 +0.1
256,385 + HMPREF1058_RS02215 0.30 +0.7

Or see this region's nucleotide sequence