Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00100 and HMPREF1058_RS00095 are separated by 211 nucleotides HMPREF1058_RS00095 and HMPREF1058_RS00090 overlap by 22 nucleotides
HMPREF1058_RS00100: HMPREF1058_RS00100 - beta-glucuronidase, at 59,162 to 62,029
_RS00100
HMPREF1058_RS00095: HMPREF1058_RS00095 - family 43 glycosylhydrolase, at 62,241 to 64,595
_RS00095
HMPREF1058_RS00090: HMPREF1058_RS00090 - beta-galactosidase, at 64,574 to 66,688
_RS00090
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 61.242 kb on - strand, within HMPREF1058_RS00100 at 61.352 kb on + strand, within HMPREF1058_RS00100 at 61.504 kb on + strand, within HMPREF1058_RS00100 at 61.537 kb on + strand, within HMPREF1058_RS00100 at 61.537 kb on + strand, within HMPREF1058_RS00100 at 61.538 kb on - strand, within HMPREF1058_RS00100 at 61.538 kb on - strand, within HMPREF1058_RS00100 at 61.542 kb on + strand, within HMPREF1058_RS00100 at 61.610 kb on + strand, within HMPREF1058_RS00100 at 61.639 kb on + strand, within HMPREF1058_RS00100 at 61.639 kb on + strand, within HMPREF1058_RS00100 at 61.640 kb on - strand at 61.640 kb on - strand, within HMPREF1058_RS00100 at 61.701 kb on + strand, within HMPREF1058_RS00100 at 61.701 kb on + strand, within HMPREF1058_RS00100 at 61.702 kb on - strand, within HMPREF1058_RS00100 at 61.776 kb on + strand at 61.783 kb on - strand at 62.000 kb on + strand at 62.033 kb on - strand at 62.105 kb on - strand at 62.145 kb on + strand at 62.145 kb on + strand at 62.146 kb on - strand at 62.146 kb on - strand at 62.146 kb on - strand at 62.167 kb on + strand at 62.176 kb on + strand at 62.214 kb on + strand at 62.215 kb on - strand at 62.227 kb on - strand at 62.227 kb on - strand at 62.237 kb on - strand at 62.237 kb on - strand at 62.522 kb on + strand, within HMPREF1058_RS00095 at 62.524 kb on + strand, within HMPREF1058_RS00095 at 62.525 kb on - strand, within HMPREF1058_RS00095 at 62.525 kb on - strand, within HMPREF1058_RS00095 at 62.606 kb on + strand, within HMPREF1058_RS00095 at 62.739 kb on + strand, within HMPREF1058_RS00095 at 62.740 kb on - strand, within HMPREF1058_RS00095 at 62.740 kb on - strand, within HMPREF1058_RS00095 at 62.828 kb on - strand, within HMPREF1058_RS00095 at 62.942 kb on + strand, within HMPREF1058_RS00095 at 63.039 kb on - strand, within HMPREF1058_RS00095 at 63.107 kb on - strand, within HMPREF1058_RS00095 at 63.160 kb on + strand, within HMPREF1058_RS00095 at 63.168 kb on - strand, within HMPREF1058_RS00095 at 63.180 kb on - strand, within HMPREF1058_RS00095 at 63.245 kb on + strand, within HMPREF1058_RS00095 at 63.246 kb on - strand, within HMPREF1058_RS00095 at 63.249 kb on + strand, within HMPREF1058_RS00095 at 63.250 kb on - strand, within HMPREF1058_RS00095 at 63.266 kb on + strand, within HMPREF1058_RS00095 at 63.391 kb on - strand, within HMPREF1058_RS00095 at 63.515 kb on + strand, within HMPREF1058_RS00095 at 63.515 kb on + strand, within HMPREF1058_RS00095 at 63.515 kb on + strand, within HMPREF1058_RS00095 at 63.516 kb on - strand, within HMPREF1058_RS00095 at 63.516 kb on - strand, within HMPREF1058_RS00095 at 63.576 kb on - strand, within HMPREF1058_RS00095 at 63.731 kb on + strand, within HMPREF1058_RS00095 at 63.798 kb on - strand, within HMPREF1058_RS00095 at 63.802 kb on - strand, within HMPREF1058_RS00095 at 63.808 kb on - strand, within HMPREF1058_RS00095 at 63.813 kb on + strand, within HMPREF1058_RS00095 at 63.814 kb on - strand, within HMPREF1058_RS00095 at 63.815 kb on + strand, within HMPREF1058_RS00095 at 63.837 kb on + strand, within HMPREF1058_RS00095 at 63.842 kb on - strand, within HMPREF1058_RS00095 at 63.842 kb on - strand, within HMPREF1058_RS00095 at 63.842 kb on - strand, within HMPREF1058_RS00095 at 63.962 kb on - strand, within HMPREF1058_RS00095 at 63.966 kb on + strand, within HMPREF1058_RS00095 at 63.989 kb on + strand, within HMPREF1058_RS00095 at 63.990 kb on - strand, within HMPREF1058_RS00095 at 63.990 kb on - strand, within HMPREF1058_RS00095 at 64.036 kb on + strand, within HMPREF1058_RS00095 at 64.036 kb on + strand, within HMPREF1058_RS00095 at 64.037 kb on - strand, within HMPREF1058_RS00095 at 64.037 kb on - strand, within HMPREF1058_RS00095 at 64.039 kb on - strand, within HMPREF1058_RS00095 at 64.073 kb on + strand, within HMPREF1058_RS00095 at 64.074 kb on - strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.271 kb on + strand, within HMPREF1058_RS00095 at 64.272 kb on - strand, within HMPREF1058_RS00095 at 64.272 kb on - strand, within HMPREF1058_RS00095 at 64.273 kb on + strand, within HMPREF1058_RS00095 at 64.273 kb on + strand, within HMPREF1058_RS00095 at 64.273 kb on + strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.274 kb on - strand, within HMPREF1058_RS00095 at 64.275 kb on + strand, within HMPREF1058_RS00095 at 64.275 kb on + strand, within HMPREF1058_RS00095 at 64.382 kb on - strand at 64.405 kb on + strand at 64.480 kb on + strand at 64.532 kb on - strand at 64.537 kb on - strand at 64.537 kb on - strand at 64.553 kb on - strand at 64.718 kb on + strand at 64.719 kb on - strand at 64.890 kb on - strand, within HMPREF1058_RS00090 at 64.912 kb on + strand, within HMPREF1058_RS00090 at 64.919 kb on - strand, within HMPREF1058_RS00090 at 64.952 kb on + strand, within HMPREF1058_RS00090 at 64.953 kb on - strand, within HMPREF1058_RS00090 at 65.051 kb on + strand, within HMPREF1058_RS00090 at 65.054 kb on - strand, within HMPREF1058_RS00090 at 65.144 kb on + strand, within HMPREF1058_RS00090 at 65.253 kb on - strand, within HMPREF1058_RS00090 at 65.417 kb on - strand, within HMPREF1058_RS00090 at 65.420 kb on + strand, within HMPREF1058_RS00090 at 65.420 kb on + strand, within HMPREF1058_RS00090 at 65.421 kb on - strand, within HMPREF1058_RS00090 at 65.429 kb on - strand, within HMPREF1058_RS00090 at 65.446 kb on + strand, within HMPREF1058_RS00090 at 65.448 kb on + strand, within HMPREF1058_RS00090 at 65.448 kb on + strand, within HMPREF1058_RS00090 at 65.449 kb on - strand, within HMPREF1058_RS00090 at 65.449 kb on - strand, within HMPREF1058_RS00090 at 65.482 kb on + strand, within HMPREF1058_RS00090 at 65.492 kb on - strand, within HMPREF1058_RS00090 at 65.499 kb on - strand, within HMPREF1058_RS00090 at 65.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 61,242 - HMPREF1058_RS00100 0.73 -1.0 61,352 + HMPREF1058_RS00100 0.76 -0.7 61,504 + HMPREF1058_RS00100 0.82 -0.3 61,537 + HMPREF1058_RS00100 0.83 +2.9 61,537 + HMPREF1058_RS00100 0.83 +0.3 61,538 - HMPREF1058_RS00100 0.83 +0.3 61,538 - HMPREF1058_RS00100 0.83 -0.2 61,542 + HMPREF1058_RS00100 0.83 -0.1 61,610 + HMPREF1058_RS00100 0.85 -0.9 61,639 + HMPREF1058_RS00100 0.86 -2.1 61,639 + HMPREF1058_RS00100 0.86 +0.4 61,640 - -0.1 61,640 - HMPREF1058_RS00100 0.86 -0.1 61,701 + HMPREF1058_RS00100 0.89 +0.3 61,701 + HMPREF1058_RS00100 0.89 +0.1 61,702 - HMPREF1058_RS00100 0.89 -0.8 61,776 + -0.1 61,783 - -0.5 62,000 + -0.2 62,033 - +0.3 62,105 - -0.4 62,145 + -0.4 62,145 + -0.9 62,146 - -1.1 62,146 - -0.5 62,146 - +1.7 62,167 + -0.9 62,176 + -1.2 62,214 + -0.5 62,215 - -0.4 62,227 - +0.2 62,227 - +1.0 62,237 - +0.7 62,237 - -0.7 62,522 + HMPREF1058_RS00095 0.12 +0.1 62,524 + HMPREF1058_RS00095 0.12 -0.6 62,525 - HMPREF1058_RS00095 0.12 -0.2 62,525 - HMPREF1058_RS00095 0.12 +0.3 62,606 + HMPREF1058_RS00095 0.15 +0.4 62,739 + HMPREF1058_RS00095 0.21 -0.5 62,740 - HMPREF1058_RS00095 0.21 -0.6 62,740 - HMPREF1058_RS00095 0.21 -0.2 62,828 - HMPREF1058_RS00095 0.25 -0.5 62,942 + HMPREF1058_RS00095 0.30 -1.7 63,039 - HMPREF1058_RS00095 0.34 +0.3 63,107 - HMPREF1058_RS00095 0.37 -0.2 63,160 + HMPREF1058_RS00095 0.39 -0.0 63,168 - HMPREF1058_RS00095 0.39 +0.7 63,180 - HMPREF1058_RS00095 0.40 -0.1 63,245 + HMPREF1058_RS00095 0.43 -0.3 63,246 - HMPREF1058_RS00095 0.43 -0.8 63,249 + HMPREF1058_RS00095 0.43 -0.6 63,250 - HMPREF1058_RS00095 0.43 +0.5 63,266 + HMPREF1058_RS00095 0.44 -0.4 63,391 - HMPREF1058_RS00095 0.49 -1.1 63,515 + HMPREF1058_RS00095 0.54 -0.1 63,515 + HMPREF1058_RS00095 0.54 +0.4 63,515 + HMPREF1058_RS00095 0.54 -0.1 63,516 - HMPREF1058_RS00095 0.54 +0.2 63,516 - HMPREF1058_RS00095 0.54 -1.5 63,576 - HMPREF1058_RS00095 0.57 -2.1 63,731 + HMPREF1058_RS00095 0.63 +1.0 63,798 - HMPREF1058_RS00095 0.66 +1.5 63,802 - HMPREF1058_RS00095 0.66 -0.8 63,808 - HMPREF1058_RS00095 0.67 -1.0 63,813 + HMPREF1058_RS00095 0.67 -0.1 63,814 - HMPREF1058_RS00095 0.67 -0.1 63,815 + HMPREF1058_RS00095 0.67 +0.3 63,837 + HMPREF1058_RS00095 0.68 +0.1 63,842 - HMPREF1058_RS00095 0.68 +1.3 63,842 - HMPREF1058_RS00095 0.68 -0.2 63,842 - HMPREF1058_RS00095 0.68 +0.0 63,962 - HMPREF1058_RS00095 0.73 -0.4 63,966 + HMPREF1058_RS00095 0.73 +0.3 63,989 + HMPREF1058_RS00095 0.74 +1.1 63,990 - HMPREF1058_RS00095 0.74 -0.4 63,990 - HMPREF1058_RS00095 0.74 +0.5 64,036 + HMPREF1058_RS00095 0.76 +2.1 64,036 + HMPREF1058_RS00095 0.76 -0.2 64,037 - HMPREF1058_RS00095 0.76 -0.2 64,037 - HMPREF1058_RS00095 0.76 +0.5 64,039 - HMPREF1058_RS00095 0.76 +0.8 64,073 + HMPREF1058_RS00095 0.78 -0.4 64,074 - HMPREF1058_RS00095 0.78 +1.8 64,271 + HMPREF1058_RS00095 0.86 -0.5 64,271 + HMPREF1058_RS00095 0.86 +0.6 64,271 + HMPREF1058_RS00095 0.86 -0.4 64,271 + HMPREF1058_RS00095 0.86 -2.7 64,271 + HMPREF1058_RS00095 0.86 -1.8 64,271 + HMPREF1058_RS00095 0.86 +1.4 64,272 - HMPREF1058_RS00095 0.86 -0.1 64,272 - HMPREF1058_RS00095 0.86 +0.2 64,273 + HMPREF1058_RS00095 0.86 +0.9 64,273 + HMPREF1058_RS00095 0.86 -0.5 64,273 + HMPREF1058_RS00095 0.86 -0.9 64,274 - HMPREF1058_RS00095 0.86 +0.9 64,274 - HMPREF1058_RS00095 0.86 +0.2 64,274 - HMPREF1058_RS00095 0.86 +0.1 64,274 - HMPREF1058_RS00095 0.86 +0.1 64,274 - HMPREF1058_RS00095 0.86 -0.0 64,274 - HMPREF1058_RS00095 0.86 +1.0 64,274 - HMPREF1058_RS00095 0.86 +0.1 64,275 + HMPREF1058_RS00095 0.86 -0.5 64,275 + HMPREF1058_RS00095 0.86 -0.8 64,382 - -0.1 64,405 + -1.0 64,480 + -0.4 64,532 - +0.6 64,537 - -1.2 64,537 - -0.7 64,553 - +2.5 64,718 + -0.3 64,719 - +0.2 64,890 - HMPREF1058_RS00090 0.15 +0.8 64,912 + HMPREF1058_RS00090 0.16 -0.4 64,919 - HMPREF1058_RS00090 0.16 -0.5 64,952 + HMPREF1058_RS00090 0.18 -0.1 64,953 - HMPREF1058_RS00090 0.18 -1.0 65,051 + HMPREF1058_RS00090 0.23 -0.2 65,054 - HMPREF1058_RS00090 0.23 -1.5 65,144 + HMPREF1058_RS00090 0.27 -0.4 65,253 - HMPREF1058_RS00090 0.32 +1.8 65,417 - HMPREF1058_RS00090 0.40 +0.6 65,420 + HMPREF1058_RS00090 0.40 +0.5 65,420 + HMPREF1058_RS00090 0.40 -0.2 65,421 - HMPREF1058_RS00090 0.40 +0.5 65,429 - HMPREF1058_RS00090 0.40 -0.3 65,446 + HMPREF1058_RS00090 0.41 +0.5 65,448 + HMPREF1058_RS00090 0.41 -0.3 65,448 + HMPREF1058_RS00090 0.41 -0.1 65,449 - HMPREF1058_RS00090 0.41 -0.3 65,449 - HMPREF1058_RS00090 0.41 -1.2 65,482 + HMPREF1058_RS00090 0.43 +0.6 65,492 - HMPREF1058_RS00090 0.43 +0.3 65,499 - HMPREF1058_RS00090 0.44 +0.3 65,594 - +1.3
Or see this region's nucleotide sequence