Experiment: 3'-fucosyllactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04445 and HMPREF1058_RS21525 are separated by 185 nucleotides HMPREF1058_RS21525 and HMPREF1058_RS04440 are separated by 376 nucleotides
HMPREF1058_RS04445: HMPREF1058_RS04445 - porin family protein, at 33,709 to 34,106
_RS04445
HMPREF1058_RS21525: HMPREF1058_RS21525 - hypothetical protein, at 34,292 to 34,531
_RS21525
HMPREF1058_RS04440: HMPREF1058_RS04440 - hypothetical protein, at 34,908 to 36,029
_RS04440
Position (kb) 34
35 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 33.794 kb on + strand, within HMPREF1058_RS04445 at 33.794 kb on + strand, within HMPREF1058_RS04445 at 34.128 kb on + strand at 34.129 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.195 kb on - strand at 34.226 kb on + strand at 34.271 kb on - strand at 34.300 kb on - strand at 34.317 kb on - strand, within HMPREF1058_RS21525 at 34.350 kb on + strand, within HMPREF1058_RS21525 at 34.370 kb on - strand, within HMPREF1058_RS21525 at 34.403 kb on - strand, within HMPREF1058_RS21525 at 34.474 kb on + strand, within HMPREF1058_RS21525 at 34.483 kb on + strand, within HMPREF1058_RS21525 at 34.594 kb on - strand at 34.682 kb on + strand at 34.694 kb on - strand at 34.718 kb on - strand at 34.802 kb on - strand at 34.807 kb on + strand at 34.807 kb on + strand at 34.808 kb on - strand at 34.852 kb on + strand at 34.910 kb on - strand at 34.913 kb on + strand at 34.914 kb on - strand at 34.914 kb on - strand at 34.940 kb on + strand at 34.941 kb on - strand at 34.951 kb on + strand at 34.951 kb on + strand at 34.968 kb on + strand at 35.121 kb on + strand, within HMPREF1058_RS04440 at 35.126 kb on - strand, within HMPREF1058_RS04440 at 35.135 kb on + strand, within HMPREF1058_RS04440 at 35.250 kb on + strand, within HMPREF1058_RS04440 at 35.274 kb on + strand, within HMPREF1058_RS04440 at 35.274 kb on + strand, within HMPREF1058_RS04440 at 35.304 kb on - strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.371 kb on + strand, within HMPREF1058_RS04440 at 35.372 kb on - strand, within HMPREF1058_RS04440 at 35.372 kb on - strand, within HMPREF1058_RS04440 at 35.440 kb on - strand, within HMPREF1058_RS04440 at 35.440 kb on - strand, within HMPREF1058_RS04440 at 35.459 kb on + strand, within HMPREF1058_RS04440 at 35.460 kb on - strand, within HMPREF1058_RS04440 at 35.487 kb on + strand, within HMPREF1058_RS04440 at 35.490 kb on - strand, within HMPREF1058_RS04440 at 35.493 kb on - strand, within HMPREF1058_RS04440 at 35.493 kb on - strand, within HMPREF1058_RS04440 at 35.496 kb on - strand, within HMPREF1058_RS04440 at 35.501 kb on + strand, within HMPREF1058_RS04440 at 35.501 kb on + strand, within HMPREF1058_RS04440 at 35.502 kb on - strand at 35.502 kb on - strand, within HMPREF1058_RS04440 at 35.502 kb on - strand, within HMPREF1058_RS04440 at 35.502 kb on - strand, within HMPREF1058_RS04440
Per-strain Table
Position Strand Gene LocusTag Fraction 3'-fucosyllactose 10 mg/mL (C) remove 33,794 + HMPREF1058_RS04445 0.21 -1.8 33,794 + HMPREF1058_RS04445 0.21 +0.4 34,128 + -0.6 34,129 - -0.1 34,194 + +0.9 34,194 + +0.3 34,195 - -0.1 34,226 + -0.4 34,271 - +0.3 34,300 - +0.4 34,317 - HMPREF1058_RS21525 0.10 -1.0 34,350 + HMPREF1058_RS21525 0.24 -0.4 34,370 - HMPREF1058_RS21525 0.33 -2.4 34,403 - HMPREF1058_RS21525 0.46 -2.2 34,474 + HMPREF1058_RS21525 0.76 -1.0 34,483 + HMPREF1058_RS21525 0.80 +1.7 34,594 - +0.7 34,682 + -2.0 34,694 - -0.4 34,718 - +0.1 34,802 - -0.8 34,807 + -0.9 34,807 + +1.7 34,808 - +0.5 34,852 + +1.8 34,910 - +0.2 34,913 + -0.6 34,914 - +0.1 34,914 - -1.3 34,940 + +0.7 34,941 - +2.6 34,951 + +0.1 34,951 + +0.4 34,968 + +0.7 35,121 + HMPREF1058_RS04440 0.19 +1.4 35,126 - HMPREF1058_RS04440 0.19 -0.4 35,135 + HMPREF1058_RS04440 0.20 -0.5 35,250 + HMPREF1058_RS04440 0.30 +0.3 35,274 + HMPREF1058_RS04440 0.33 -0.4 35,274 + HMPREF1058_RS04440 0.33 +3.7 35,304 - HMPREF1058_RS04440 0.35 +1.0 35,371 + HMPREF1058_RS04440 0.41 -0.0 35,371 + HMPREF1058_RS04440 0.41 +1.7 35,371 + HMPREF1058_RS04440 0.41 +0.7 35,371 + HMPREF1058_RS04440 0.41 +0.0 35,372 - HMPREF1058_RS04440 0.41 +1.3 35,372 - HMPREF1058_RS04440 0.41 -0.5 35,440 - HMPREF1058_RS04440 0.47 +0.0 35,440 - HMPREF1058_RS04440 0.47 +0.2 35,459 + HMPREF1058_RS04440 0.49 +1.9 35,460 - HMPREF1058_RS04440 0.49 -0.4 35,487 + HMPREF1058_RS04440 0.52 +0.1 35,490 - HMPREF1058_RS04440 0.52 +1.2 35,493 - HMPREF1058_RS04440 0.52 +0.2 35,493 - HMPREF1058_RS04440 0.52 -0.3 35,496 - HMPREF1058_RS04440 0.52 +0.0 35,501 + HMPREF1058_RS04440 0.53 +3.3 35,501 + HMPREF1058_RS04440 0.53 -2.1 35,502 - +1.4 35,502 - HMPREF1058_RS04440 0.53 +3.7 35,502 - HMPREF1058_RS04440 0.53 -0.2 35,502 - HMPREF1058_RS04440 0.53 +0.5
Or see this region's nucleotide sequence