Experiment: 3'-fucosyllactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16815 and HMPREF1058_RS16810 are separated by 410 nucleotides HMPREF1058_RS16810 and HMPREF1058_RS16805 are separated by 362 nucleotides
HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093
_RS16815
HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878
_RS16810
HMPREF1058_RS16805: HMPREF1058_RS16805 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 591,241 to 591,819
_RS16805
Position (kb) 590
591 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 589.511 kb on + strand, within HMPREF1058_RS16815 at 589.544 kb on + strand, within HMPREF1058_RS16815 at 589.677 kb on + strand, within HMPREF1058_RS16815 at 589.730 kb on + strand, within HMPREF1058_RS16815 at 589.773 kb on - strand, within HMPREF1058_RS16815 at 589.775 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.818 kb on + strand, within HMPREF1058_RS16815 at 589.819 kb on - strand, within HMPREF1058_RS16815 at 589.824 kb on - strand, within HMPREF1058_RS16815 at 589.842 kb on + strand, within HMPREF1058_RS16815 at 589.843 kb on - strand, within HMPREF1058_RS16815 at 589.923 kb on + strand at 589.940 kb on + strand at 589.972 kb on - strand at 589.980 kb on + strand at 589.981 kb on - strand at 590.097 kb on - strand at 590.107 kb on + strand at 590.118 kb on - strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.120 kb on - strand at 590.120 kb on - strand at 590.166 kb on - strand at 590.175 kb on + strand at 590.176 kb on - strand at 590.180 kb on - strand at 590.186 kb on - strand at 590.192 kb on - strand at 590.192 kb on - strand at 590.239 kb on + strand at 590.239 kb on + strand at 590.261 kb on + strand at 590.267 kb on - strand at 590.270 kb on - strand at 590.273 kb on - strand at 590.279 kb on - strand at 590.279 kb on - strand at 590.426 kb on - strand at 590.506 kb on - strand at 590.506 kb on - strand at 590.529 kb on + strand at 590.529 kb on + strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.557 kb on + strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.605 kb on + strand, within HMPREF1058_RS16810 at 590.606 kb on - strand, within HMPREF1058_RS16810 at 590.717 kb on - strand, within HMPREF1058_RS16810 at 590.786 kb on + strand, within HMPREF1058_RS16810 at 590.787 kb on - strand, within HMPREF1058_RS16810 at 590.830 kb on + strand, within HMPREF1058_RS16810 at 590.843 kb on + strand at 590.867 kb on + strand at 590.919 kb on - strand at 590.926 kb on - strand at 590.936 kb on + strand at 590.937 kb on - strand at 590.947 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand at 591.112 kb on + strand at 591.115 kb on - strand at 591.141 kb on + strand at 591.150 kb on - strand at 591.219 kb on + strand at 591.232 kb on + strand at 591.268 kb on + strand at 591.268 kb on + strand at 591.269 kb on - strand at 591.277 kb on + strand at 591.324 kb on - strand, within HMPREF1058_RS16805 at 591.387 kb on - strand, within HMPREF1058_RS16805 at 591.454 kb on - strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.486 kb on + strand, within HMPREF1058_RS16805 at 591.523 kb on - strand, within HMPREF1058_RS16805 at 591.575 kb on - strand, within HMPREF1058_RS16805 at 591.584 kb on + strand, within HMPREF1058_RS16805 at 591.640 kb on - strand, within HMPREF1058_RS16805 at 591.668 kb on + strand, within HMPREF1058_RS16805 at 591.710 kb on + strand, within HMPREF1058_RS16805 at 591.781 kb on - strand at 591.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3'-fucosyllactose 10 mg/mL (C) remove 589,511 + HMPREF1058_RS16815 0.68 +3.9 589,544 + HMPREF1058_RS16815 0.69 -2.1 589,677 + HMPREF1058_RS16815 0.77 -2.8 589,730 + HMPREF1058_RS16815 0.80 -1.2 589,773 - HMPREF1058_RS16815 0.82 -4.1 589,775 - HMPREF1058_RS16815 0.82 +0.3 589,817 - HMPREF1058_RS16815 0.85 -2.5 589,817 - HMPREF1058_RS16815 0.85 -1.0 589,818 + HMPREF1058_RS16815 0.85 -2.2 589,819 - HMPREF1058_RS16815 0.85 -2.3 589,824 - HMPREF1058_RS16815 0.85 -3.5 589,842 + HMPREF1058_RS16815 0.86 -1.3 589,843 - HMPREF1058_RS16815 0.86 -0.1 589,923 + -2.5 589,940 + -2.7 589,972 - -0.5 589,980 + -4.4 589,981 - -1.8 590,097 - -0.8 590,107 + -1.6 590,118 - +0.5 590,119 + -0.8 590,119 + -2.6 590,119 + -2.1 590,120 - -0.4 590,120 - -0.4 590,166 - -2.4 590,175 + -5.1 590,176 - -3.8 590,180 - -4.1 590,186 - -4.3 590,192 - -4.8 590,192 - -3.3 590,239 + -1.7 590,239 + -2.0 590,261 + -1.5 590,267 - +1.8 590,270 - -0.0 590,273 - -0.7 590,279 - -0.2 590,279 - +2.2 590,426 - +0.2 590,506 - -0.7 590,506 - +0.0 590,529 + -0.8 590,529 + -0.5 590,530 - -0.0 590,530 - -0.9 590,530 - +0.2 590,557 + HMPREF1058_RS16810 0.14 +1.0 590,558 - HMPREF1058_RS16810 0.14 -1.7 590,558 - HMPREF1058_RS16810 0.14 +0.4 590,578 - HMPREF1058_RS16810 0.20 -2.2 590,578 - HMPREF1058_RS16810 0.20 -0.6 590,605 + HMPREF1058_RS16810 0.27 -2.0 590,606 - HMPREF1058_RS16810 0.27 -1.1 590,717 - HMPREF1058_RS16810 0.57 -0.4 590,786 + HMPREF1058_RS16810 0.75 -0.8 590,787 - HMPREF1058_RS16810 0.75 -1.7 590,830 + HMPREF1058_RS16810 0.87 -1.0 590,843 + -1.7 590,867 + -3.1 590,919 - -1.0 590,926 - +0.1 590,936 + +1.1 590,937 - -1.1 590,947 + -0.9 590,950 + -2.2 590,951 - +0.0 591,112 + -1.1 591,115 - -0.2 591,141 + -0.4 591,150 - +0.7 591,219 + +0.4 591,232 + -1.5 591,268 + +1.5 591,268 + +0.3 591,269 - -0.9 591,277 + -1.1 591,324 - HMPREF1058_RS16805 0.14 +1.0 591,387 - HMPREF1058_RS16805 0.25 +0.6 591,454 - HMPREF1058_RS16805 0.37 -0.4 591,480 + HMPREF1058_RS16805 0.41 +0.3 591,480 + HMPREF1058_RS16805 0.41 +0.2 591,486 + HMPREF1058_RS16805 0.42 +0.0 591,523 - HMPREF1058_RS16805 0.49 -1.1 591,575 - HMPREF1058_RS16805 0.58 +1.9 591,584 + HMPREF1058_RS16805 0.59 +2.2 591,640 - HMPREF1058_RS16805 0.69 -0.7 591,668 + HMPREF1058_RS16805 0.74 -0.2 591,710 + HMPREF1058_RS16805 0.81 +0.6 591,781 - +1.9 591,818 - -0.8
Or see this region's nucleotide sequence