Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21575

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
121,093	-		HMPREF1058_RS18595	0.68	+1.3
121,122	+		HMPREF1058_RS18595	0.70	+1.0
121,123	-		HMPREF1058_RS18595	0.70	-0.7
121,123	-		HMPREF1058_RS18595	0.70	+0.3
121,722	+				-0.0
121,722	+				+1.1
121,724	+				+4.0
121,724	+				+1.7
121,724	+				-0.8
121,724	+				+1.3
121,725	-				-0.3
121,789	+				+2.0
121,789	+				+0.1
121,820	-				+2.1
121,820	-				+0.1
121,854	-				+1.2
121,893	+				-1.6
121,900	-				-0.0
121,916	+				+1.3
121,959	+				+0.6
121,980	+				+0.6
121,983	+				-0.1
122,018	-				+0.2
122,023	+				-0.4
122,081	+				+1.2
122,081	+				-0.8
122,082	-				-0.0
122,240	+		HMPREF1058_RS21575	0.50	-0.1
122,296	-		HMPREF1058_RS21575	0.67	-1.4
122,398	+				-0.9
122,469	-				+0.3
122,490	-				+0.2
122,506	+				-1.2
122,508	+				+0.3
122,545	+				+0.3
122,546	-				-1.2
122,546	-				-0.1
122,629	+				+1.1
122,629	+				-0.5
122,634	-				-0.3
122,647	+				+0.1
122,716	-				-0.5
122,719	+				+1.4
122,814	+				-1.9
122,815	-				-0.0
122,824	+				+1.1
123,062	+		HMPREF1058_RS20205	0.17	+4.3
123,065	+		HMPREF1058_RS20205	0.17	-0.1
123,123	+		HMPREF1058_RS20205	0.21	+0.4
123,123	+		HMPREF1058_RS20205	0.21	-1.6
123,124	-		HMPREF1058_RS20205	0.21	+0.4
123,124	-		HMPREF1058_RS20205	0.21	+1.3
123,124	-		HMPREF1058_RS20205	0.21	-1.6
123,167	-		HMPREF1058_RS20205	0.24	-0.8
123,176	+		HMPREF1058_RS20205	0.25	-0.7
123,176	+		HMPREF1058_RS20205	0.25	-0.1
123,176	+		HMPREF1058_RS20205	0.25	-1.4
123,178	+		HMPREF1058_RS20205	0.25	-0.4
123,179	-		HMPREF1058_RS20205	0.25	-1.2
123,215	-		HMPREF1058_RS20205	0.27	+0.4
123,218	+		HMPREF1058_RS20205	0.28	+0.6
123,268	+		HMPREF1058_RS20205	0.31	-1.3
123,306	+		HMPREF1058_RS20205	0.34	+0.7
123,307	-		HMPREF1058_RS20205	0.34	-1.7
123,343	+		HMPREF1058_RS20205	0.36	-0.0
123,389	+		HMPREF1058_RS20205	0.39	+0.6
123,389	+		HMPREF1058_RS20205	0.39	+0.1
123,390	-		HMPREF1058_RS20205	0.39	-1.6
123,390	-		HMPREF1058_RS20205	0.39	-1.1