Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21545

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
34,511	-				-0.0
34,637	-				-0.6
34,643	-				-1.9
34,653	+				+0.3
34,657	-				+1.5
34,659	+				+0.4
34,660	-				-1.2
34,709	+				+0.6
35,042	+				-0.6
35,042	+				-1.1
35,043	-				+2.0
35,043	-				-2.2
35,217	-		HMPREF1058_RS01830	0.38	+0.4
35,217	-		HMPREF1058_RS01830	0.38	-2.0
35,224	+		HMPREF1058_RS01830	0.39	+0.8
35,274	-		HMPREF1058_RS01830	0.52	-0.6
35,353	-		HMPREF1058_RS01830	0.72	-2.7
35,355	-		HMPREF1058_RS01830	0.72	+1.0
35,470	+				+1.3
35,593	+		HMPREF1058_RS21545	0.73	-1.3
35,593	+		HMPREF1058_RS21545	0.73	-2.5
35,644	+				-1.1
35,644	+				-3.0
35,645	-				+0.3
35,645	-				+0.5
35,646	+				-0.4
35,646	+				+1.2
35,647	-				-1.5
35,649	+				+0.6
35,650	-				+2.8
35,650	-				-0.0
35,677	-				+0.4
35,760	-		HMPREF1058_RS21715	0.23	+0.6
35,799	-		HMPREF1058_RS21715	0.31	-1.7
35,848	+		HMPREF1058_RS21715	0.40	-1.0
35,848	+		HMPREF1058_RS21715	0.40	-0.8
35,849	-				+2.3
35,852	+		HMPREF1058_RS21715	0.40	+0.2
35,852	+		HMPREF1058_RS21715	0.40	-0.6
35,869	+		HMPREF1058_RS21715	0.44	-1.9
35,870	-		HMPREF1058_RS21715	0.44	+0.6
35,940	+		HMPREF1058_RS21715	0.57	-0.7
36,128	+				-1.0
36,128	+				-1.5
36,129	-				+0.6
36,169	+				+0.8
36,183	+				-0.7
36,341	+				-0.9
36,371	-				+2.0
36,391	-				-0.9
36,446	+				-1.3
36,464	+				+0.9
36,465	-				+2.8
36,487	-				-2.2
36,517	+		HMPREF1058_RS01820	0.20	+0.9