Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21520

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
10,324	+				+0.7
10,324	+				+0.5
10,442	+		HMPREF1058_RS04545	0.53	-0.1
10,729	+				+1.1
10,729	+				+0.2
10,847	+				-0.3
10,847	+				-1.0
11,039	+		HMPREF1058_RS04530	0.12	+1.1
11,058	+		HMPREF1058_RS04530	0.21	+0.7
11,102	+		HMPREF1058_RS04530	0.42	-0.7
11,235	+				+1.4
11,244	+				-1.7
11,296	+		HMPREF1058_RS21520	0.20	-1.6
11,508	+				+1.1
11,715	+				-0.1
11,740	+				+1.4
11,850	+		HMPREF1058_RS04525	0.34	-1.0
11,874	+		HMPREF1058_RS04525	0.42	+1.2
11,884	+		HMPREF1058_RS04525	0.46	+0.2
11,884	+		HMPREF1058_RS04525	0.46	+0.3
11,886	+		HMPREF1058_RS04525	0.46	+0.8
11,886	+		HMPREF1058_RS04525	0.46	+0.4
12,000	+		HMPREF1058_RS04525	0.85	-2.0
12,191	+				+0.5
12,238	+				-1.2
12,331	+				+0.8