Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04615 and HMPREF1058_RS04610 are separated by 104 nucleotides HMPREF1058_RS04610 and HMPREF1058_RS21515 are separated by 55 nucleotides HMPREF1058_RS21515 and HMPREF1058_RS04605 overlap by 22 nucleotides HMPREF1058_RS04605 and HMPREF1058_RS04600 are separated by 109 nucleotides
HMPREF1058_RS04615: HMPREF1058_RS04615 - hypothetical protein, at 311 to 829
_RS04615
HMPREF1058_RS04610: HMPREF1058_RS04610 - ATP-binding protein, at 934 to 1,530
_RS04610
HMPREF1058_RS21515: HMPREF1058_RS21515 - hypothetical protein, at 1,586 to 2,380
_RS21515
HMPREF1058_RS04605: HMPREF1058_RS04605 - HNH endonuclease, at 2,359 to 2,856
_RS04605
HMPREF1058_RS04600: HMPREF1058_RS04600 - hypothetical protein, at 2,966 to 3,409
_RS04600
Position (kb) 1
2
3 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 0.647 kb on - strand, within HMPREF1058_RS04615 at 0.647 kb on - strand at 0.648 kb on + strand, within HMPREF1058_RS04615 at 0.664 kb on - strand, within HMPREF1058_RS04615 at 0.856 kb on - strand at 0.859 kb on + strand at 0.859 kb on + strand at 0.859 kb on + strand at 0.863 kb on + strand at 0.864 kb on - strand at 0.923 kb on + strand at 0.923 kb on + strand at 0.928 kb on + strand at 0.929 kb on - strand at 1.052 kb on + strand, within HMPREF1058_RS04610 at 1.053 kb on - strand, within HMPREF1058_RS04610 at 1.159 kb on + strand, within HMPREF1058_RS04610 at 1.160 kb on - strand, within HMPREF1058_RS04610 at 1.221 kb on - strand, within HMPREF1058_RS04610 at 1.226 kb on + strand, within HMPREF1058_RS04610 at 1.234 kb on + strand, within HMPREF1058_RS04610 at 1.234 kb on + strand, within HMPREF1058_RS04610 at 1.253 kb on + strand, within HMPREF1058_RS04610 at 1.446 kb on - strand, within HMPREF1058_RS04610 at 1.448 kb on + strand, within HMPREF1058_RS04610 at 1.602 kb on + strand at 1.631 kb on + strand at 1.631 kb on + strand at 1.631 kb on + strand at 1.665 kb on + strand at 1.736 kb on - strand, within HMPREF1058_RS21515 at 1.836 kb on + strand, within HMPREF1058_RS21515 at 1.884 kb on + strand, within HMPREF1058_RS21515 at 1.885 kb on - strand, within HMPREF1058_RS21515 at 1.885 kb on - strand, within HMPREF1058_RS21515 at 1.999 kb on + strand, within HMPREF1058_RS21515 at 2.024 kb on - strand, within HMPREF1058_RS21515 at 2.033 kb on + strand, within HMPREF1058_RS21515 at 2.034 kb on - strand, within HMPREF1058_RS21515 at 2.107 kb on + strand, within HMPREF1058_RS21515 at 2.161 kb on + strand, within HMPREF1058_RS21515 at 2.191 kb on - strand, within HMPREF1058_RS21515 at 2.336 kb on - strand at 2.394 kb on + strand at 2.529 kb on + strand, within HMPREF1058_RS04605 at 2.703 kb on + strand, within HMPREF1058_RS04605 at 2.762 kb on + strand, within HMPREF1058_RS04605 at 2.815 kb on + strand at 2.887 kb on + strand at 2.887 kb on + strand at 2.891 kb on + strand at 2.932 kb on + strand at 2.960 kb on + strand at 3.192 kb on + strand, within HMPREF1058_RS04600 at 3.317 kb on + strand, within HMPREF1058_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 647 - HMPREF1058_RS04615 0.65 -1.4 647 - +0.9 648 + HMPREF1058_RS04615 0.65 +0.7 664 - HMPREF1058_RS04615 0.68 +2.2 856 - +1.7 859 + -1.0 859 + -0.7 859 + +0.9 863 + -0.6 864 - -0.9 923 + -1.0 923 + +0.5 928 + +0.7 929 - -3.2 1,052 + HMPREF1058_RS04610 0.20 +0.5 1,053 - HMPREF1058_RS04610 0.20 -0.0 1,159 + HMPREF1058_RS04610 0.38 -0.3 1,160 - HMPREF1058_RS04610 0.38 -1.8 1,221 - HMPREF1058_RS04610 0.48 -1.6 1,226 + HMPREF1058_RS04610 0.49 +0.9 1,234 + HMPREF1058_RS04610 0.50 -0.5 1,234 + HMPREF1058_RS04610 0.50 -0.1 1,253 + HMPREF1058_RS04610 0.53 +1.8 1,446 - HMPREF1058_RS04610 0.86 +1.1 1,448 + HMPREF1058_RS04610 0.86 -0.2 1,602 + +0.8 1,631 + -0.9 1,631 + +1.8 1,631 + +3.2 1,665 + -2.7 1,736 - HMPREF1058_RS21515 0.19 -0.6 1,836 + HMPREF1058_RS21515 0.31 +0.4 1,884 + HMPREF1058_RS21515 0.37 -0.9 1,885 - HMPREF1058_RS21515 0.38 -0.5 1,885 - HMPREF1058_RS21515 0.38 -1.2 1,999 + HMPREF1058_RS21515 0.52 -1.5 2,024 - HMPREF1058_RS21515 0.55 +0.5 2,033 + HMPREF1058_RS21515 0.56 -1.4 2,034 - HMPREF1058_RS21515 0.56 +1.2 2,107 + HMPREF1058_RS21515 0.66 -0.8 2,161 + HMPREF1058_RS21515 0.72 -0.9 2,191 - HMPREF1058_RS21515 0.76 -0.5 2,336 - +1.1 2,394 + +1.1 2,529 + HMPREF1058_RS04605 0.34 +1.0 2,703 + HMPREF1058_RS04605 0.69 -2.0 2,762 + HMPREF1058_RS04605 0.81 +0.9 2,815 + -0.5 2,887 + -1.9 2,887 + -1.1 2,891 + -0.5 2,932 + -0.5 2,960 + -0.1 3,192 + HMPREF1058_RS04600 0.51 +0.7 3,317 + HMPREF1058_RS04600 0.79 -1.3
Or see this region's nucleotide sequence