Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21085

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03730 and HMPREF1058_RS21085 are separated by 472 nucleotidesHMPREF1058_RS21085 and HMPREF1058_RS03725 are separated by 327 nucleotides HMPREF1058_RS03730: HMPREF1058_RS03730 - transposase, at 201,359 to 202,363 _RS03730 HMPREF1058_RS21085: HMPREF1058_RS21085 - transposase, at 202,836 to 203,147 _RS21085 HMPREF1058_RS03725: HMPREF1058_RS03725 - pyruvate, phosphate dikinase, at 203,475 to 206,195 _RS03725 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 202.435 kb on - strandat 202.574 kb on - strandat 202.586 kb on + strandat 202.586 kb on + strandat 202.588 kb on + strandat 202.590 kb on + strandat 202.605 kb on + strandat 202.605 kb on + strandat 202.606 kb on - strandat 202.627 kb on + strandat 202.627 kb on + strandat 202.627 kb on + strandat 202.627 kb on + strandat 202.627 kb on + strandat 202.627 kb on + strandat 202.628 kb on - strandat 202.628 kb on - strandat 202.628 kb on - strandat 202.628 kb on - strandat 202.628 kb on - strandat 202.628 kb on - strandat 202.628 kb on - strandat 202.631 kb on + strandat 202.631 kb on + strandat 202.631 kb on + strandat 202.637 kb on + strandat 202.648 kb on - strandat 202.653 kb on + strandat 202.654 kb on - strandat 202.654 kb on - strandat 202.685 kb on + strandat 202.702 kb on + strandat 202.703 kb on - strandat 202.772 kb on + strandat 202.783 kb on - strandat 202.803 kb on + strandat 202.804 kb on - strandat 202.837 kb on - strandat 202.891 kb on + strand, within HMPREF1058_RS21085at 202.892 kb on - strand, within HMPREF1058_RS21085at 202.951 kb on + strand, within HMPREF1058_RS21085at 202.975 kb on + strand, within HMPREF1058_RS21085at 203.019 kb on - strand, within HMPREF1058_RS21085at 203.042 kb on + strand, within HMPREF1058_RS21085at 203.043 kb on - strand, within HMPREF1058_RS21085at 203.073 kb on + strand, within HMPREF1058_RS21085at 203.095 kb on + strand, within HMPREF1058_RS21085at 203.189 kb on + strandat 203.190 kb on - strandat 203.199 kb on + strandat 203.199 kb on + strandat 203.239 kb on + strandat 203.274 kb on - strandat 203.283 kb on - strandat 203.360 kb on - strandat 203.390 kb on + strandat 203.391 kb on - strandat 203.476 kb on + strandat 203.692 kb on - strandat 203.712 kb on + strandat 203.712 kb on + strandat 203.813 kb on - strand, within HMPREF1058_RS03725at 204.108 kb on + strand, within HMPREF1058_RS03725at 204.109 kb on - strand, within HMPREF1058_RS03725

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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202,435 - +0.0
202,574 - -1.4
202,586 + -1.2
202,586 + -1.5
202,588 + -0.7
202,590 + -0.6
202,605 + +0.8
202,605 + -0.1
202,606 - -0.3
202,627 + +0.8
202,627 + +1.5
202,627 + +4.2
202,627 + -1.2
202,627 + +0.6
202,627 + -0.2
202,628 - +0.3
202,628 - -2.5
202,628 - -0.4
202,628 - -0.8
202,628 - -0.2
202,628 - +0.9
202,628 - +0.7
202,631 + +0.2
202,631 + +0.8
202,631 + +1.1
202,637 + +0.5
202,648 - -1.5
202,653 + -0.2
202,654 - -2.8
202,654 - +2.2
202,685 + +0.4
202,702 + -1.3
202,703 - +0.2
202,772 + +1.4
202,783 - +0.5
202,803 + +0.4
202,804 - -3.2
202,837 - +0.2
202,891 + HMPREF1058_RS21085 0.18 -2.0
202,892 - HMPREF1058_RS21085 0.18 -0.7
202,951 + HMPREF1058_RS21085 0.37 -2.3
202,975 + HMPREF1058_RS21085 0.45 -2.4
203,019 - HMPREF1058_RS21085 0.59 -1.5
203,042 + HMPREF1058_RS21085 0.66 -1.9
203,043 - HMPREF1058_RS21085 0.66 +2.2
203,073 + HMPREF1058_RS21085 0.76 -0.5
203,095 + HMPREF1058_RS21085 0.83 +0.5
203,189 + -0.6
203,190 - -0.9
203,199 + -1.0
203,199 + +1.0
203,239 + +0.6
203,274 - -0.4
203,283 - -0.4
203,360 - +0.1
203,390 + +0.2
203,391 - +0.1
203,476 + +1.4
203,692 - +0.8
203,712 + -2.0
203,712 + -2.2
203,813 - HMPREF1058_RS03725 0.12 +0.0
204,108 + HMPREF1058_RS03725 0.23 -0.2
204,109 - HMPREF1058_RS03725 0.23 -1.0

Or see this region's nucleotide sequence