Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21045 and HMPREF1058_RS04435 are separated by 157 nucleotides HMPREF1058_RS04435 and HMPREF1058_RS21050 are separated by 253 nucleotides HMPREF1058_RS21050 and HMPREF1058_RS04430 are separated by 124 nucleotides
HMPREF1058_RS21045: HMPREF1058_RS21045 - hypothetical protein, at 36,125 to 36,364
_RS21045
HMPREF1058_RS04435: HMPREF1058_RS04435 - hypothetical protein, at 36,522 to 36,779
_RS04435
HMPREF1058_RS21050: HMPREF1058_RS21050 - transposase, at 37,033 to 37,196
_RS21050
HMPREF1058_RS04430: HMPREF1058_RS04430 - alpha-1,2-fucosyltransferase, at 37,321 to 38,166
_RS04430
Position (kb) 37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 36.035 kb on + strand at 36.036 kb on - strand at 36.037 kb on + strand at 36.037 kb on + strand at 36.038 kb on - strand at 36.052 kb on + strand at 36.052 kb on + strand at 36.126 kb on + strand at 36.187 kb on + strand, within HMPREF1058_RS21045 at 36.190 kb on - strand, within HMPREF1058_RS21045 at 36.200 kb on + strand, within HMPREF1058_RS21045 at 36.217 kb on + strand, within HMPREF1058_RS21045 at 36.218 kb on - strand, within HMPREF1058_RS21045 at 36.221 kb on - strand, within HMPREF1058_RS21045 at 36.251 kb on + strand, within HMPREF1058_RS21045 at 36.251 kb on + strand, within HMPREF1058_RS21045 at 36.252 kb on - strand, within HMPREF1058_RS21045 at 36.253 kb on + strand, within HMPREF1058_RS21045 at 36.253 kb on + strand, within HMPREF1058_RS21045 at 36.253 kb on + strand, within HMPREF1058_RS21045 at 36.253 kb on + strand, within HMPREF1058_RS21045 at 36.253 kb on + strand, within HMPREF1058_RS21045 at 36.254 kb on - strand, within HMPREF1058_RS21045 at 36.254 kb on - strand, within HMPREF1058_RS21045 at 36.255 kb on + strand, within HMPREF1058_RS21045 at 36.480 kb on + strand at 36.489 kb on - strand at 36.499 kb on + strand at 36.500 kb on + strand at 36.501 kb on - strand at 36.502 kb on + strand at 36.514 kb on - strand at 36.521 kb on + strand at 36.527 kb on + strand at 36.528 kb on - strand at 36.529 kb on + strand at 36.599 kb on + strand, within HMPREF1058_RS04435 at 36.614 kb on + strand, within HMPREF1058_RS04435 at 36.638 kb on - strand, within HMPREF1058_RS04435 at 36.643 kb on - strand, within HMPREF1058_RS04435 at 36.652 kb on + strand, within HMPREF1058_RS04435 at 36.653 kb on - strand, within HMPREF1058_RS04435 at 36.653 kb on - strand, within HMPREF1058_RS04435 at 36.679 kb on + strand, within HMPREF1058_RS04435 at 36.680 kb on - strand, within HMPREF1058_RS04435 at 36.680 kb on - strand, within HMPREF1058_RS04435 at 36.708 kb on + strand, within HMPREF1058_RS04435 at 36.799 kb on + strand at 36.802 kb on - strand at 36.938 kb on + strand at 36.939 kb on - strand at 37.178 kb on + strand, within HMPREF1058_RS21050 at 37.178 kb on + strand, within HMPREF1058_RS21050 at 37.181 kb on + strand at 37.225 kb on + strand at 37.312 kb on + strand at 37.312 kb on + strand at 37.355 kb on + strand at 37.356 kb on - strand at 37.452 kb on + strand, within HMPREF1058_RS04430 at 37.535 kb on + strand, within HMPREF1058_RS04430 at 37.536 kb on - strand, within HMPREF1058_RS04430 at 37.537 kb on + strand, within HMPREF1058_RS04430 at 37.593 kb on + strand, within HMPREF1058_RS04430 at 37.649 kb on + strand, within HMPREF1058_RS04430 at 37.650 kb on - strand, within HMPREF1058_RS04430 at 37.650 kb on - strand, within HMPREF1058_RS04430 at 37.650 kb on - strand, within HMPREF1058_RS04430 at 37.655 kb on - strand, within HMPREF1058_RS04430 at 37.663 kb on + strand, within HMPREF1058_RS04430 at 37.664 kb on - strand, within HMPREF1058_RS04430 at 37.716 kb on + strand, within HMPREF1058_RS04430 at 37.721 kb on - strand, within HMPREF1058_RS04430 at 37.721 kb on - strand, within HMPREF1058_RS04430 at 37.765 kb on - strand, within HMPREF1058_RS04430 at 37.912 kb on - strand, within HMPREF1058_RS04430 at 37.935 kb on - strand, within HMPREF1058_RS04430 at 37.987 kb on - strand, within HMPREF1058_RS04430 at 38.046 kb on + strand, within HMPREF1058_RS04430 at 38.048 kb on + strand, within HMPREF1058_RS04430 at 38.071 kb on + strand, within HMPREF1058_RS04430 at 38.073 kb on + strand, within HMPREF1058_RS04430 at 38.087 kb on + strand at 38.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 36,035 + -0.8 36,036 - -1.0 36,037 + +1.4 36,037 + -1.4 36,038 - -0.4 36,052 + +2.2 36,052 + +0.2 36,126 + -0.2 36,187 + HMPREF1058_RS21045 0.26 +0.8 36,190 - HMPREF1058_RS21045 0.27 +1.9 36,200 + HMPREF1058_RS21045 0.31 -1.0 36,217 + HMPREF1058_RS21045 0.38 +1.9 36,218 - HMPREF1058_RS21045 0.39 +1.2 36,221 - HMPREF1058_RS21045 0.40 -1.5 36,251 + HMPREF1058_RS21045 0.53 -0.0 36,251 + HMPREF1058_RS21045 0.53 +1.4 36,252 - HMPREF1058_RS21045 0.53 -2.3 36,253 + HMPREF1058_RS21045 0.53 -1.2 36,253 + HMPREF1058_RS21045 0.53 +0.2 36,253 + HMPREF1058_RS21045 0.53 -0.6 36,253 + HMPREF1058_RS21045 0.53 -0.1 36,253 + HMPREF1058_RS21045 0.53 -1.3 36,254 - HMPREF1058_RS21045 0.54 +2.7 36,254 - HMPREF1058_RS21045 0.54 +0.4 36,255 + HMPREF1058_RS21045 0.54 -0.3 36,480 + -0.8 36,489 - +2.4 36,499 + -0.5 36,500 + -1.6 36,501 - +2.1 36,502 + -1.6 36,514 - +0.4 36,521 + +0.4 36,527 + +0.4 36,528 - +3.2 36,529 + -1.8 36,599 + HMPREF1058_RS04435 0.30 -1.7 36,614 + HMPREF1058_RS04435 0.36 -0.3 36,638 - HMPREF1058_RS04435 0.45 +1.2 36,643 - HMPREF1058_RS04435 0.47 +0.8 36,652 + HMPREF1058_RS04435 0.50 -3.0 36,653 - HMPREF1058_RS04435 0.51 -1.4 36,653 - HMPREF1058_RS04435 0.51 +1.2 36,679 + HMPREF1058_RS04435 0.61 +0.2 36,680 - HMPREF1058_RS04435 0.61 +0.3 36,680 - HMPREF1058_RS04435 0.61 +0.4 36,708 + HMPREF1058_RS04435 0.72 -2.6 36,799 + -0.8 36,802 - +0.9 36,938 + -0.6 36,939 - +0.1 37,178 + HMPREF1058_RS21050 0.88 -1.7 37,178 + HMPREF1058_RS21050 0.88 -1.3 37,181 + +1.4 37,225 + -0.7 37,312 + -2.7 37,312 + +0.2 37,355 + -3.0 37,356 - -1.6 37,452 + HMPREF1058_RS04430 0.15 -1.0 37,535 + HMPREF1058_RS04430 0.25 -0.2 37,536 - HMPREF1058_RS04430 0.25 +4.2 37,537 + HMPREF1058_RS04430 0.26 -0.5 37,593 + HMPREF1058_RS04430 0.32 +2.2 37,649 + HMPREF1058_RS04430 0.39 -2.5 37,650 - HMPREF1058_RS04430 0.39 +0.3 37,650 - HMPREF1058_RS04430 0.39 +1.9 37,650 - HMPREF1058_RS04430 0.39 +1.4 37,655 - HMPREF1058_RS04430 0.39 -0.8 37,663 + HMPREF1058_RS04430 0.40 +1.1 37,664 - HMPREF1058_RS04430 0.41 -0.1 37,716 + HMPREF1058_RS04430 0.47 +0.0 37,721 - HMPREF1058_RS04430 0.47 +3.0 37,721 - HMPREF1058_RS04430 0.47 -0.3 37,765 - HMPREF1058_RS04430 0.52 +0.5 37,912 - HMPREF1058_RS04430 0.70 +0.5 37,935 - HMPREF1058_RS04430 0.73 +0.5 37,987 - HMPREF1058_RS04430 0.79 -0.0 38,046 + HMPREF1058_RS04430 0.86 +0.3 38,048 + HMPREF1058_RS04430 0.86 -0.2 38,071 + HMPREF1058_RS04430 0.89 -0.4 38,073 + HMPREF1058_RS04430 0.89 +0.1 38,087 + +1.4 38,155 + -1.1
Or see this region's nucleotide sequence