Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05340 and HMPREF1058_RS20985 are separated by 286 nucleotides HMPREF1058_RS20985 and HMPREF1058_RS05335 are separated by 294 nucleotides
HMPREF1058_RS05340: HMPREF1058_RS05340 - site-specific integrase, at 186,216 to 187,445
_RS05340
HMPREF1058_RS20985: HMPREF1058_RS20985 - tyrosine-type recombinase/integrase, at 187,732 to 187,899
_RS20985
HMPREF1058_RS05335: HMPREF1058_RS05335 - hypothetical protein, at 188,194 to 188,982
_RS05335
Position (kb) 187
188 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 186.808 kb on + strand, within HMPREF1058_RS05340 at 186.808 kb on + strand, within HMPREF1058_RS05340 at 186.808 kb on + strand, within HMPREF1058_RS05340 at 186.938 kb on - strand, within HMPREF1058_RS05340 at 187.523 kb on + strand at 187.524 kb on - strand at 187.753 kb on + strand, within HMPREF1058_RS20985 at 187.753 kb on + strand, within HMPREF1058_RS20985 at 187.754 kb on - strand, within HMPREF1058_RS20985 at 187.850 kb on + strand, within HMPREF1058_RS20985 at 187.887 kb on - strand at 187.900 kb on + strand at 187.958 kb on + strand at 188.002 kb on + strand at 188.006 kb on + strand at 188.085 kb on - strand at 188.096 kb on - strand at 188.096 kb on - strand at 188.100 kb on + strand at 188.228 kb on + strand at 188.228 kb on + strand at 188.228 kb on + strand at 188.231 kb on - strand at 188.317 kb on + strand, within HMPREF1058_RS05335 at 188.318 kb on - strand, within HMPREF1058_RS05335 at 188.318 kb on - strand, within HMPREF1058_RS05335 at 188.344 kb on - strand, within HMPREF1058_RS05335 at 188.348 kb on + strand, within HMPREF1058_RS05335 at 188.421 kb on - strand, within HMPREF1058_RS05335 at 188.437 kb on - strand, within HMPREF1058_RS05335 at 188.489 kb on + strand, within HMPREF1058_RS05335 at 188.541 kb on + strand, within HMPREF1058_RS05335 at 188.567 kb on + strand, within HMPREF1058_RS05335 at 188.612 kb on + strand, within HMPREF1058_RS05335 at 188.612 kb on + strand, within HMPREF1058_RS05335 at 188.623 kb on - strand, within HMPREF1058_RS05335 at 188.640 kb on + strand, within HMPREF1058_RS05335 at 188.652 kb on + strand, within HMPREF1058_RS05335 at 188.721 kb on - strand, within HMPREF1058_RS05335 at 188.777 kb on + strand, within HMPREF1058_RS05335 at 188.787 kb on + strand, within HMPREF1058_RS05335 at 188.873 kb on + strand, within HMPREF1058_RS05335 at 188.874 kb on - strand, within HMPREF1058_RS05335
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 186,808 + HMPREF1058_RS05340 0.48 -0.4 186,808 + HMPREF1058_RS05340 0.48 +1.6 186,808 + HMPREF1058_RS05340 0.48 -0.3 186,938 - HMPREF1058_RS05340 0.59 -0.2 187,523 + +0.6 187,524 - +1.8 187,753 + HMPREF1058_RS20985 0.12 -1.0 187,753 + HMPREF1058_RS20985 0.12 +0.0 187,754 - HMPREF1058_RS20985 0.13 -0.3 187,850 + HMPREF1058_RS20985 0.70 -0.4 187,887 - +3.4 187,900 + +0.4 187,958 + +0.3 188,002 + +0.1 188,006 + -1.2 188,085 - +0.2 188,096 - -0.3 188,096 - -1.2 188,100 + +4.2 188,228 + -2.2 188,228 + +1.3 188,228 + +0.7 188,231 - +1.2 188,317 + HMPREF1058_RS05335 0.16 -1.1 188,318 - HMPREF1058_RS05335 0.16 -0.4 188,318 - HMPREF1058_RS05335 0.16 +0.0 188,344 - HMPREF1058_RS05335 0.19 -1.2 188,348 + HMPREF1058_RS05335 0.20 -1.1 188,421 - HMPREF1058_RS05335 0.29 +0.3 188,437 - HMPREF1058_RS05335 0.31 -1.4 188,489 + HMPREF1058_RS05335 0.37 -0.3 188,541 + HMPREF1058_RS05335 0.44 -0.2 188,567 + HMPREF1058_RS05335 0.47 -0.7 188,612 + HMPREF1058_RS05335 0.53 -0.7 188,612 + HMPREF1058_RS05335 0.53 -0.4 188,623 - HMPREF1058_RS05335 0.54 -0.1 188,640 + HMPREF1058_RS05335 0.57 +1.3 188,652 + HMPREF1058_RS05335 0.58 -0.7 188,721 - HMPREF1058_RS05335 0.67 +0.6 188,777 + HMPREF1058_RS05335 0.74 +0.2 188,787 + HMPREF1058_RS05335 0.75 -0.5 188,873 + HMPREF1058_RS05335 0.86 -0.8 188,874 - HMPREF1058_RS05335 0.86 +1.1
Or see this region's nucleotide sequence