Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19135 and HMPREF1058_RS19130 overlap by 1 nucleotides HMPREF1058_RS19130 and HMPREF1058_RS19125 are separated by 83 nucleotides HMPREF1058_RS19125 and HMPREF1058_RS19120 are separated by 11 nucleotides HMPREF1058_RS19120 and HMPREF1058_RS19115 are separated by 122 nucleotides
HMPREF1058_RS19135: HMPREF1058_RS19135 - hypothetical protein, at 18,285 to 19,796
_RS19135
HMPREF1058_RS19130: HMPREF1058_RS19130 - hypothetical protein, at 19,796 to 20,143
_RS19130
HMPREF1058_RS19125: HMPREF1058_RS19125 - hypothetical protein, at 20,227 to 21,240
_RS19125
HMPREF1058_RS19120: HMPREF1058_RS19120 - hypothetical protein, at 21,252 to 21,440
_RS19120
HMPREF1058_RS19115: HMPREF1058_RS19115 - hypothetical protein, at 21,563 to 22,699
_RS19115
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 19.252 kb on - strand, within HMPREF1058_RS19135 at 19.294 kb on + strand, within HMPREF1058_RS19135 at 19.417 kb on + strand, within HMPREF1058_RS19135 at 19.499 kb on + strand, within HMPREF1058_RS19135 at 19.509 kb on + strand, within HMPREF1058_RS19135 at 19.584 kb on - strand, within HMPREF1058_RS19135 at 19.588 kb on + strand at 19.588 kb on + strand, within HMPREF1058_RS19135 at 19.589 kb on - strand, within HMPREF1058_RS19135 at 19.593 kb on - strand, within HMPREF1058_RS19135 at 19.601 kb on + strand, within HMPREF1058_RS19135 at 19.685 kb on + strand at 19.765 kb on - strand at 19.768 kb on + strand at 19.768 kb on + strand at 19.768 kb on + strand at 19.769 kb on - strand at 19.769 kb on - strand at 19.806 kb on - strand at 19.878 kb on + strand, within HMPREF1058_RS19130 at 19.958 kb on - strand, within HMPREF1058_RS19130 at 19.967 kb on + strand, within HMPREF1058_RS19130 at 19.988 kb on + strand, within HMPREF1058_RS19130 at 20.037 kb on + strand, within HMPREF1058_RS19130 at 20.060 kb on + strand, within HMPREF1058_RS19130 at 20.203 kb on + strand at 20.203 kb on + strand at 20.204 kb on - strand at 20.204 kb on - strand at 20.208 kb on + strand at 20.208 kb on + strand at 20.209 kb on - strand at 20.209 kb on - strand at 20.213 kb on - strand at 20.381 kb on + strand, within HMPREF1058_RS19125 at 20.412 kb on + strand, within HMPREF1058_RS19125 at 20.413 kb on - strand, within HMPREF1058_RS19125 at 20.543 kb on + strand, within HMPREF1058_RS19125 at 20.674 kb on - strand, within HMPREF1058_RS19125 at 20.706 kb on + strand, within HMPREF1058_RS19125 at 20.707 kb on - strand at 20.741 kb on - strand, within HMPREF1058_RS19125 at 20.871 kb on - strand, within HMPREF1058_RS19125 at 20.871 kb on - strand, within HMPREF1058_RS19125 at 21.089 kb on - strand, within HMPREF1058_RS19125 at 21.149 kb on + strand at 21.204 kb on + strand at 21.225 kb on - strand at 21.287 kb on + strand, within HMPREF1058_RS19120 at 21.419 kb on + strand, within HMPREF1058_RS19120 at 21.446 kb on - strand at 21.463 kb on - strand at 21.564 kb on + strand at 21.566 kb on + strand at 21.566 kb on + strand at 21.566 kb on + strand at 21.567 kb on - strand at 21.569 kb on - strand at 21.604 kb on + strand at 21.630 kb on + strand at 21.700 kb on + strand, within HMPREF1058_RS19115 at 21.718 kb on + strand, within HMPREF1058_RS19115 at 21.719 kb on - strand, within HMPREF1058_RS19115 at 21.719 kb on - strand, within HMPREF1058_RS19115 at 21.719 kb on - strand, within HMPREF1058_RS19115 at 21.882 kb on - strand, within HMPREF1058_RS19115 at 21.926 kb on - strand, within HMPREF1058_RS19115 at 21.984 kb on + strand, within HMPREF1058_RS19115 at 22.002 kb on - strand, within HMPREF1058_RS19115 at 22.002 kb on - strand at 22.003 kb on + strand, within HMPREF1058_RS19115 at 22.003 kb on + strand, within HMPREF1058_RS19115 at 22.004 kb on - strand, within HMPREF1058_RS19115 at 22.004 kb on - strand, within HMPREF1058_RS19115 at 22.071 kb on - strand, within HMPREF1058_RS19115 at 22.071 kb on - strand, within HMPREF1058_RS19115 at 22.071 kb on - strand, within HMPREF1058_RS19115 at 22.073 kb on - strand, within HMPREF1058_RS19115 at 22.128 kb on + strand, within HMPREF1058_RS19115 at 22.129 kb on - strand, within HMPREF1058_RS19115 at 22.129 kb on - strand, within HMPREF1058_RS19115 at 22.146 kb on + strand, within HMPREF1058_RS19115
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 19,252 - HMPREF1058_RS19135 0.64 -1.3 19,294 + HMPREF1058_RS19135 0.67 -0.5 19,417 + HMPREF1058_RS19135 0.75 +1.1 19,499 + HMPREF1058_RS19135 0.80 -0.7 19,509 + HMPREF1058_RS19135 0.81 +1.3 19,584 - HMPREF1058_RS19135 0.86 +1.7 19,588 + +2.7 19,588 + HMPREF1058_RS19135 0.86 +1.7 19,589 - HMPREF1058_RS19135 0.86 +2.4 19,593 - HMPREF1058_RS19135 0.87 -1.5 19,601 + HMPREF1058_RS19135 0.87 -0.6 19,685 + -0.7 19,765 - +1.7 19,768 + -0.5 19,768 + +2.3 19,768 + +3.5 19,769 - +2.2 19,769 - -0.5 19,806 - -1.4 19,878 + HMPREF1058_RS19130 0.24 +2.2 19,958 - HMPREF1058_RS19130 0.47 -0.6 19,967 + HMPREF1058_RS19130 0.49 -0.0 19,988 + HMPREF1058_RS19130 0.55 +0.9 20,037 + HMPREF1058_RS19130 0.69 -0.4 20,060 + HMPREF1058_RS19130 0.76 -0.5 20,203 + -1.1 20,203 + -0.6 20,204 - +1.1 20,204 - +0.3 20,208 + +0.4 20,208 + +1.9 20,209 - -0.9 20,209 - +0.4 20,213 - -1.5 20,381 + HMPREF1058_RS19125 0.15 -1.7 20,412 + HMPREF1058_RS19125 0.18 -2.0 20,413 - HMPREF1058_RS19125 0.18 +0.1 20,543 + HMPREF1058_RS19125 0.31 -1.4 20,674 - HMPREF1058_RS19125 0.44 -0.3 20,706 + HMPREF1058_RS19125 0.47 +0.1 20,707 - +3.3 20,741 - HMPREF1058_RS19125 0.51 -2.4 20,871 - HMPREF1058_RS19125 0.64 +0.5 20,871 - HMPREF1058_RS19125 0.64 -1.0 21,089 - HMPREF1058_RS19125 0.85 +0.5 21,149 + +0.2 21,204 + -1.3 21,225 - -2.6 21,287 + HMPREF1058_RS19120 0.19 -0.3 21,419 + HMPREF1058_RS19120 0.88 -0.9 21,446 - +0.6 21,463 - +0.5 21,564 + -0.9 21,566 + -0.4 21,566 + +0.4 21,566 + -0.8 21,567 - -1.7 21,569 - +3.3 21,604 + +0.1 21,630 + -0.1 21,700 + HMPREF1058_RS19115 0.12 +1.0 21,718 + HMPREF1058_RS19115 0.14 -1.6 21,719 - HMPREF1058_RS19115 0.14 -1.2 21,719 - HMPREF1058_RS19115 0.14 -2.3 21,719 - HMPREF1058_RS19115 0.14 -1.2 21,882 - HMPREF1058_RS19115 0.28 -0.9 21,926 - HMPREF1058_RS19115 0.32 -0.0 21,984 + HMPREF1058_RS19115 0.37 +0.7 22,002 - HMPREF1058_RS19115 0.39 -3.0 22,002 - +2.3 22,003 + HMPREF1058_RS19115 0.39 -0.6 22,003 + HMPREF1058_RS19115 0.39 -1.2 22,004 - HMPREF1058_RS19115 0.39 -0.5 22,004 - HMPREF1058_RS19115 0.39 -1.5 22,071 - HMPREF1058_RS19115 0.45 -0.6 22,071 - HMPREF1058_RS19115 0.45 +0.4 22,071 - HMPREF1058_RS19115 0.45 +0.6 22,073 - HMPREF1058_RS19115 0.45 -1.1 22,128 + HMPREF1058_RS19115 0.50 +0.6 22,129 - HMPREF1058_RS19115 0.50 -0.4 22,129 - HMPREF1058_RS19115 0.50 -0.0 22,146 + HMPREF1058_RS19115 0.51 -0.1
Or see this region's nucleotide sequence