Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS19025

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
30,584	-				+1.1
30,618	-		HMPREF1058_RS20340	0.17	-1.2
30,704	-		HMPREF1058_RS20340	0.53	-0.7
30,710	-		HMPREF1058_RS20340	0.56	-0.7
30,733	-		HMPREF1058_RS20340	0.66	+1.0
30,746	-		HMPREF1058_RS20340	0.71	-0.8
30,746	-		HMPREF1058_RS20340	0.71	+1.6
30,754	+		HMPREF1058_RS20340	0.75	+3.0
30,755	-		HMPREF1058_RS20340	0.75	+0.9
30,813	-				+1.6
30,820	+				+3.3
30,820	+				-0.2
30,820	+				-1.2
30,821	-				+1.7
30,827	-				-0.8
30,869	-				+1.7
30,940	+				+0.0
30,952	-				-0.1
31,007	+				+0.9
31,007	+				-2.5
31,007	+				-3.2
31,007	+				+1.9
31,008	-				-1.8
31,008	-				-0.5
31,008	-				+0.4
31,008	-				-1.2
31,008	-				+0.4
31,009	-				+0.1
31,010	-				-1.2
31,010	-				-1.3
31,010	-				-1.8
31,059	+				+2.3
31,104	-				+0.7
31,124	-				+0.6
31,211	+		HMPREF1058_RS19030	0.31	+1.7
31,240	+		HMPREF1058_RS19030	0.39	-0.8
31,241	-		HMPREF1058_RS19030	0.40	-1.0
31,278	+		HMPREF1058_RS19030	0.50	+2.3
31,279	-		HMPREF1058_RS19030	0.50	+0.9
31,282	+		HMPREF1058_RS19030	0.51	-0.0
31,282	+		HMPREF1058_RS19030	0.51	-1.6
31,293	+		HMPREF1058_RS19030	0.54	+1.6
31,294	-		HMPREF1058_RS19030	0.55	-0.6
31,340	+		HMPREF1058_RS19030	0.68	+0.0
31,341	-		HMPREF1058_RS19030	0.68	-0.5
31,341	-		HMPREF1058_RS19030	0.68	-1.7
31,355	+		HMPREF1058_RS19030	0.72	-0.4
31,390	+		HMPREF1058_RS19030	0.82	+0.7
31,391	-		HMPREF1058_RS19030	0.82	-1.3
31,393	-		HMPREF1058_RS19030	0.83	+0.0
31,394	+		HMPREF1058_RS19030	0.83	-1.7
31,394	+		HMPREF1058_RS19030	0.83	-0.8
31,394	+		HMPREF1058_RS19030	0.83	+0.3
31,395	-		HMPREF1058_RS19030	0.83	-0.8
31,434	+				+1.3
31,434	+				-0.3
31,455	+				-1.0
31,456	-				-0.4
31,462	+				-1.0
31,498	-		HMPREF1058_RS19025	0.17	-0.8
31,590	+		HMPREF1058_RS19025	0.63	-0.9
31,594	+		HMPREF1058_RS19025	0.65	+1.0
31,716	-				+1.1
31,734	-				-1.6
31,769	+				-0.0
31,795	-				-2.6
31,825	+				-0.9
31,827	+				-0.5
31,856	-				-1.7
32,217	+				+1.7
32,225	+				+0.5
32,225	+				-1.1
32,225	+				-1.1
32,225	+				+1.1
32,262	-				+2.9
32,262	-				+1.2
32,282	-		HMPREF1058_RS19020	0.10	-1.8
32,282	-		HMPREF1058_RS19020	0.10	+0.1
32,346	+		HMPREF1058_RS19020	0.41	-1.4
32,358	+		HMPREF1058_RS19020	0.47	-0.9
32,360	+		HMPREF1058_RS19020	0.48	-1.0
32,361	-		HMPREF1058_RS19020	0.48	+0.4
32,363	-		HMPREF1058_RS19020	0.49	+1.8
32,431	+		HMPREF1058_RS19020	0.81	-0.5
32,469	+				+1.3
32,511	-				+1.7
32,516	-				+0.9
32,516	-				+0.2
32,516	-				+1.0
32,539	-		HMPREF1058_RS19015	0.12	+2.3
32,583	+		HMPREF1058_RS19015	0.29	-1.1
32,584	-		HMPREF1058_RS19015	0.29	-2.4
32,618	+		HMPREF1058_RS19015	0.43	+0.4
32,629	-		HMPREF1058_RS19015	0.47	+1.7
32,633	-		HMPREF1058_RS19015	0.49	-0.3
32,633	-		HMPREF1058_RS19015	0.49	+1.3
32,656	-		HMPREF1058_RS19015	0.58	-1.4