Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18660

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18670 and HMPREF1058_RS18660 are separated by 424 nucleotidesHMPREF1058_RS18660 and HMPREF1058_RS18655 are separated by 8 nucleotides HMPREF1058_RS18670: HMPREF1058_RS18670 - F0F1 ATP synthase subunit A, at 103,089 to 104,180 _RS18670 HMPREF1058_RS18660: HMPREF1058_RS18660 - hypothetical protein, at 104,605 to 104,859 _RS18660 HMPREF1058_RS18655: HMPREF1058_RS18655 - F0F1 ATP synthase subunit beta, at 104,868 to 106,403 _RS18655 Position (kb) 104 105Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 103.625 kb on + strand, within HMPREF1058_RS18670at 103.626 kb on - strand, within HMPREF1058_RS18670at 103.628 kb on - strand, within HMPREF1058_RS18670at 103.676 kb on + strand, within HMPREF1058_RS18670at 103.722 kb on + strand, within HMPREF1058_RS18670at 103.761 kb on + strand, within HMPREF1058_RS18670at 103.762 kb on - strand, within HMPREF1058_RS18670at 103.762 kb on - strand, within HMPREF1058_RS18670at 103.812 kb on - strand, within HMPREF1058_RS18670at 103.812 kb on - strand, within HMPREF1058_RS18670at 103.869 kb on - strand, within HMPREF1058_RS18670at 103.897 kb on + strand, within HMPREF1058_RS18670at 103.991 kb on + strand, within HMPREF1058_RS18670at 103.991 kb on + strand, within HMPREF1058_RS18670at 103.992 kb on - strand, within HMPREF1058_RS18670at 103.995 kb on + strand, within HMPREF1058_RS18670at 103.995 kb on + strand, within HMPREF1058_RS18670at 103.996 kb on - strand, within HMPREF1058_RS18670at 103.996 kb on - strand, within HMPREF1058_RS18670at 103.997 kb on + strand, within HMPREF1058_RS18670at 103.997 kb on + strand, within HMPREF1058_RS18670at 103.998 kb on - strand, within HMPREF1058_RS18670at 103.998 kb on - strand, within HMPREF1058_RS18670at 103.998 kb on - strand, within HMPREF1058_RS18670at 104.003 kb on + strand, within HMPREF1058_RS18670at 104.003 kb on + strand, within HMPREF1058_RS18670at 104.004 kb on - strand, within HMPREF1058_RS18670at 104.010 kb on + strand, within HMPREF1058_RS18670at 104.010 kb on + strand, within HMPREF1058_RS18670at 104.011 kb on - strand, within HMPREF1058_RS18670at 104.043 kb on + strand, within HMPREF1058_RS18670at 104.043 kb on + strandat 104.044 kb on - strand, within HMPREF1058_RS18670at 104.044 kb on - strand, within HMPREF1058_RS18670at 104.044 kb on - strand, within HMPREF1058_RS18670at 104.044 kb on - strand, within HMPREF1058_RS18670at 104.046 kb on - strand, within HMPREF1058_RS18670at 104.160 kb on + strandat 104.160 kb on + strandat 104.160 kb on + strandat 104.161 kb on - strandat 104.162 kb on + strandat 104.162 kb on + strandat 104.162 kb on + strandat 104.164 kb on + strandat 104.183 kb on + strandat 104.187 kb on + strandat 104.190 kb on - strandat 104.265 kb on - strandat 104.265 kb on - strandat 104.276 kb on + strandat 104.276 kb on + strandat 104.277 kb on - strandat 104.277 kb on - strandat 104.285 kb on - strandat 104.287 kb on - strandat 104.424 kb on + strandat 104.424 kb on + strandat 104.424 kb on + strandat 104.425 kb on - strandat 104.425 kb on - strandat 104.425 kb on - strandat 104.487 kb on - strandat 104.536 kb on + strandat 104.536 kb on + strandat 104.546 kb on - strandat 104.546 kb on - strandat 104.549 kb on - strandat 104.600 kb on - strandat 104.696 kb on + strand, within HMPREF1058_RS18660at 104.744 kb on + strand, within HMPREF1058_RS18660at 104.859 kb on + strandat 104.860 kb on - strandat 104.869 kb on + strandat 104.935 kb on - strandat 104.963 kb on - strandat 104.963 kb on - strandat 105.146 kb on + strand, within HMPREF1058_RS18655at 105.146 kb on + strand, within HMPREF1058_RS18655at 105.211 kb on + strand, within HMPREF1058_RS18655at 105.245 kb on + strand, within HMPREF1058_RS18655at 105.246 kb on - strand, within HMPREF1058_RS18655at 105.270 kb on + strand, within HMPREF1058_RS18655at 105.302 kb on + strand, within HMPREF1058_RS18655at 105.341 kb on + strand, within HMPREF1058_RS18655at 105.341 kb on + strand, within HMPREF1058_RS18655at 105.378 kb on + strand, within HMPREF1058_RS18655at 105.382 kb on + strand, within HMPREF1058_RS18655at 105.382 kb on + strand, within HMPREF1058_RS18655at 105.382 kb on + strand, within HMPREF1058_RS18655at 105.382 kb on + strand, within HMPREF1058_RS18655at 105.382 kb on + strand, within HMPREF1058_RS18655at 105.382 kb on + strand, within HMPREF1058_RS18655at 105.383 kb on - strand, within HMPREF1058_RS18655at 105.383 kb on - strand, within HMPREF1058_RS18655at 105.383 kb on - strand, within HMPREF1058_RS18655at 105.420 kb on - strand, within HMPREF1058_RS18655at 105.540 kb on + strand, within HMPREF1058_RS18655at 105.540 kb on + strand, within HMPREF1058_RS18655at 105.541 kb on - strand, within HMPREF1058_RS18655at 105.543 kb on - strand, within HMPREF1058_RS18655at 105.677 kb on - strand, within HMPREF1058_RS18655at 105.712 kb on + strand, within HMPREF1058_RS18655at 105.712 kb on + strand, within HMPREF1058_RS18655at 105.827 kb on + strand, within HMPREF1058_RS18655at 105.827 kb on + strand, within HMPREF1058_RS18655at 105.828 kb on - strand, within HMPREF1058_RS18655

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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103,625 + HMPREF1058_RS18670 0.49 -0.1
103,626 - HMPREF1058_RS18670 0.49 +2.0
103,628 - HMPREF1058_RS18670 0.49 +0.6
103,676 + HMPREF1058_RS18670 0.54 +0.8
103,722 + HMPREF1058_RS18670 0.58 -1.0
103,761 + HMPREF1058_RS18670 0.62 +1.9
103,762 - HMPREF1058_RS18670 0.62 +1.1
103,762 - HMPREF1058_RS18670 0.62 +1.0
103,812 - HMPREF1058_RS18670 0.66 -0.4
103,812 - HMPREF1058_RS18670 0.66 +0.6
103,869 - HMPREF1058_RS18670 0.71 -0.1
103,897 + HMPREF1058_RS18670 0.74 -1.7
103,991 + HMPREF1058_RS18670 0.83 +0.4
103,991 + HMPREF1058_RS18670 0.83 +1.9
103,992 - HMPREF1058_RS18670 0.83 +0.5
103,995 + HMPREF1058_RS18670 0.83 -0.7
103,995 + HMPREF1058_RS18670 0.83 -1.0
103,996 - HMPREF1058_RS18670 0.83 +0.6
103,996 - HMPREF1058_RS18670 0.83 -0.8
103,997 + HMPREF1058_RS18670 0.83 -1.5
103,997 + HMPREF1058_RS18670 0.83 -0.1
103,998 - HMPREF1058_RS18670 0.83 -1.3
103,998 - HMPREF1058_RS18670 0.83 -1.7
103,998 - HMPREF1058_RS18670 0.83 -1.6
104,003 + HMPREF1058_RS18670 0.84 +1.1
104,003 + HMPREF1058_RS18670 0.84 -0.6
104,004 - HMPREF1058_RS18670 0.84 -1.4
104,010 + HMPREF1058_RS18670 0.84 +0.1
104,010 + HMPREF1058_RS18670 0.84 +0.4
104,011 - HMPREF1058_RS18670 0.84 -0.7
104,043 + HMPREF1058_RS18670 0.87 +0.9
104,043 + +3.3
104,044 - HMPREF1058_RS18670 0.87 +0.2
104,044 - HMPREF1058_RS18670 0.87 -0.8
104,044 - HMPREF1058_RS18670 0.87 -1.2
104,044 - HMPREF1058_RS18670 0.87 +0.7
104,046 - HMPREF1058_RS18670 0.88 -0.5
104,160 + +1.0
104,160 + -0.5
104,160 + -2.6
104,161 - +0.5
104,162 + -1.0
104,162 + -1.2
104,162 + +1.9
104,164 + -1.3
104,183 + +0.1
104,187 + -2.2
104,190 - +1.0
104,265 - +0.5
104,265 - -0.4
104,276 + -0.0
104,276 + -1.7
104,277 - -0.9
104,277 - +0.6
104,285 - +0.4
104,287 - +0.4
104,424 + +1.4
104,424 + -1.1
104,424 + -1.7
104,425 - +0.7
104,425 - +2.4
104,425 - +0.1
104,487 - -1.6
104,536 + +4.3
104,536 + -0.1
104,546 - +0.0
104,546 - +0.6
104,549 - +0.7
104,600 - +0.2
104,696 + HMPREF1058_RS18660 0.36 -1.4
104,744 + HMPREF1058_RS18660 0.55 -0.3
104,859 + -0.1
104,860 - -1.2
104,869 + +0.9
104,935 - +0.2
104,963 - +0.0
104,963 - -1.3
105,146 + HMPREF1058_RS18655 0.18 -1.7
105,146 + HMPREF1058_RS18655 0.18 -0.1
105,211 + HMPREF1058_RS18655 0.22 -2.4
105,245 + HMPREF1058_RS18655 0.25 +0.7
105,246 - HMPREF1058_RS18655 0.25 -1.8
105,270 + HMPREF1058_RS18655 0.26 -1.1
105,302 + HMPREF1058_RS18655 0.28 +1.7
105,341 + HMPREF1058_RS18655 0.31 -0.5
105,341 + HMPREF1058_RS18655 0.31 -1.7
105,378 + HMPREF1058_RS18655 0.33 +2.0
105,382 + HMPREF1058_RS18655 0.33 -0.1
105,382 + HMPREF1058_RS18655 0.33 -0.5
105,382 + HMPREF1058_RS18655 0.33 +0.6
105,382 + HMPREF1058_RS18655 0.33 -1.4
105,382 + HMPREF1058_RS18655 0.33 -1.5
105,382 + HMPREF1058_RS18655 0.33 -1.0
105,383 - HMPREF1058_RS18655 0.34 -0.6
105,383 - HMPREF1058_RS18655 0.34 -2.7
105,383 - HMPREF1058_RS18655 0.34 +0.0
105,420 - HMPREF1058_RS18655 0.36 +0.1
105,540 + HMPREF1058_RS18655 0.44 +0.2
105,540 + HMPREF1058_RS18655 0.44 -0.1
105,541 - HMPREF1058_RS18655 0.44 -2.1
105,543 - HMPREF1058_RS18655 0.44 -0.5
105,677 - HMPREF1058_RS18655 0.53 +4.3
105,712 + HMPREF1058_RS18655 0.55 -1.0
105,712 + HMPREF1058_RS18655 0.55 +2.0
105,827 + HMPREF1058_RS18655 0.62 +1.0
105,827 + HMPREF1058_RS18655 0.62 +1.0
105,828 - HMPREF1058_RS18655 0.62 -2.0

Or see this region's nucleotide sequence