Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18415

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18425 and HMPREF1058_RS18420 are separated by 7 nucleotidesHMPREF1058_RS18420 and HMPREF1058_RS18415 are separated by 42 nucleotidesHMPREF1058_RS18415 and HMPREF1058_RS18410 are separated by 17 nucleotidesHMPREF1058_RS18410 and HMPREF1058_RS18405 are separated by 9 nucleotides HMPREF1058_RS18425: HMPREF1058_RS18425 - ABC-F family ATP-binding cassette domain-containing protein, at 159,988 to 161,853 _RS18425 HMPREF1058_RS18420: HMPREF1058_RS18420 - DUF3805 domain-containing protein, at 161,861 to 162,694 _RS18420 HMPREF1058_RS18415: HMPREF1058_RS18415 - VOC family protein, at 162,737 to 163,114 _RS18415 HMPREF1058_RS18410: HMPREF1058_RS18410 - MBL fold metallo-hydrolase, at 163,132 to 163,923 _RS18410 HMPREF1058_RS18405: HMPREF1058_RS18405 - hypothetical protein, at 163,933 to 165,123 _RS18405 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 161.841 kb on + strandat 161.841 kb on + strandat 161.841 kb on + strandat 161.841 kb on + strandat 161.841 kb on + strandat 161.842 kb on - strandat 161.844 kb on - strandat 161.844 kb on - strandat 161.863 kb on - strandat 161.998 kb on + strand, within HMPREF1058_RS18420at 161.999 kb on - strand, within HMPREF1058_RS18420at 162.146 kb on + strand, within HMPREF1058_RS18420at 162.146 kb on + strand, within HMPREF1058_RS18420at 162.147 kb on - strand, within HMPREF1058_RS18420at 162.158 kb on - strand, within HMPREF1058_RS18420at 162.158 kb on - strand, within HMPREF1058_RS18420at 162.209 kb on - strand, within HMPREF1058_RS18420at 162.413 kb on - strand, within HMPREF1058_RS18420at 162.413 kb on - strand, within HMPREF1058_RS18420at 162.413 kb on - strand, within HMPREF1058_RS18420at 162.423 kb on + strand, within HMPREF1058_RS18420at 162.603 kb on + strand, within HMPREF1058_RS18420at 162.625 kb on + strandat 162.625 kb on + strandat 162.626 kb on - strandat 162.694 kb on + strandat 162.721 kb on - strandat 162.790 kb on - strand, within HMPREF1058_RS18415at 162.974 kb on - strand, within HMPREF1058_RS18415at 162.976 kb on - strand, within HMPREF1058_RS18415at 163.010 kb on - strand, within HMPREF1058_RS18415at 163.031 kb on + strand, within HMPREF1058_RS18415at 163.073 kb on + strand, within HMPREF1058_RS18415at 163.115 kb on - strandat 163.249 kb on + strand, within HMPREF1058_RS18410at 163.267 kb on + strand, within HMPREF1058_RS18410at 163.302 kb on - strand, within HMPREF1058_RS18410at 163.551 kb on + strand, within HMPREF1058_RS18410at 163.553 kb on + strand, within HMPREF1058_RS18410at 163.553 kb on + strand, within HMPREF1058_RS18410at 163.554 kb on - strand, within HMPREF1058_RS18410at 163.631 kb on + strand, within HMPREF1058_RS18410at 163.631 kb on + strand, within HMPREF1058_RS18410at 163.632 kb on - strand, within HMPREF1058_RS18410at 163.713 kb on - strand, within HMPREF1058_RS18410at 163.748 kb on - strand, within HMPREF1058_RS18410at 163.844 kb on + strandat 163.859 kb on - strandat 163.899 kb on - strandat 163.900 kb on + strandat 163.900 kb on + strandat 163.900 kb on + strandat 163.900 kb on + strandat 163.901 kb on - strandat 163.901 kb on - strandat 163.901 kb on - strandat 163.903 kb on - strandat 163.905 kb on - strandat 163.923 kb on + strandat 163.924 kb on - strandat 163.991 kb on + strandat 164.048 kb on + strandat 164.049 kb on - strandat 164.067 kb on - strand, within HMPREF1058_RS18405at 164.109 kb on + strand, within HMPREF1058_RS18405at 164.110 kb on - strand, within HMPREF1058_RS18405

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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161,841 + -0.3
161,841 + +3.3
161,841 + +0.7
161,841 + +0.1
161,841 + +0.7
161,842 - -0.3
161,844 - -0.0
161,844 - -1.5
161,863 - -0.7
161,998 + HMPREF1058_RS18420 0.16 -0.2
161,999 - HMPREF1058_RS18420 0.17 -1.2
162,146 + HMPREF1058_RS18420 0.34 -1.0
162,146 + HMPREF1058_RS18420 0.34 -1.2
162,147 - HMPREF1058_RS18420 0.34 -1.7
162,158 - HMPREF1058_RS18420 0.36 -0.7
162,158 - HMPREF1058_RS18420 0.36 -0.6
162,209 - HMPREF1058_RS18420 0.42 +0.8
162,413 - HMPREF1058_RS18420 0.66 -0.8
162,413 - HMPREF1058_RS18420 0.66 -0.2
162,413 - HMPREF1058_RS18420 0.66 -1.1
162,423 + HMPREF1058_RS18420 0.67 +0.3
162,603 + HMPREF1058_RS18420 0.89 -1.3
162,625 + +0.6
162,625 + -0.9
162,626 - -0.0
162,694 + +0.7
162,721 - -0.3
162,790 - HMPREF1058_RS18415 0.14 -2.5
162,974 - HMPREF1058_RS18415 0.63 -0.7
162,976 - HMPREF1058_RS18415 0.63 +0.1
163,010 - HMPREF1058_RS18415 0.72 -0.4
163,031 + HMPREF1058_RS18415 0.78 -1.9
163,073 + HMPREF1058_RS18415 0.89 -0.3
163,115 - -0.2
163,249 + HMPREF1058_RS18410 0.15 +0.1
163,267 + HMPREF1058_RS18410 0.17 -0.3
163,302 - HMPREF1058_RS18410 0.21 -0.7
163,551 + HMPREF1058_RS18410 0.53 -0.1
163,553 + HMPREF1058_RS18410 0.53 -1.2
163,553 + HMPREF1058_RS18410 0.53 -0.2
163,554 - HMPREF1058_RS18410 0.53 +1.1
163,631 + HMPREF1058_RS18410 0.63 -2.4
163,631 + HMPREF1058_RS18410 0.63 -0.2
163,632 - HMPREF1058_RS18410 0.63 +0.5
163,713 - HMPREF1058_RS18410 0.73 -0.6
163,748 - HMPREF1058_RS18410 0.78 -2.2
163,844 + +2.3
163,859 - +1.0
163,899 - -2.2
163,900 + +0.7
163,900 + -0.6
163,900 + +0.8
163,900 + +0.8
163,901 - -1.2
163,901 - +1.9
163,901 - +0.8
163,903 - +0.5
163,905 - -1.4
163,923 + -0.6
163,924 - +1.7
163,991 + +0.6
164,048 + -0.9
164,049 - +1.1
164,067 - HMPREF1058_RS18405 0.11 -0.2
164,109 + HMPREF1058_RS18405 0.15 +0.6
164,110 - HMPREF1058_RS18405 0.15 -2.4

Or see this region's nucleotide sequence