Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18270 and HMPREF1058_RS18265 are separated by 131 nucleotides HMPREF1058_RS18265 and HMPREF1058_RS18260 are separated by 21 nucleotides
HMPREF1058_RS18270: HMPREF1058_RS18270 - fructose-bisphosphatase class III, at 218,409 to 220,409
_RS18270
HMPREF1058_RS18265: HMPREF1058_RS18265 - aspartate 1-decarboxylase, at 220,541 to 220,891
_RS18265
HMPREF1058_RS18260: HMPREF1058_RS18260 - pantoate--beta-alanine ligase, at 220,913 to 221,761
_RS18260
Position (kb) 220
221 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 219.548 kb on + strand, within HMPREF1058_RS18270 at 219.548 kb on + strand, within HMPREF1058_RS18270 at 219.750 kb on + strand, within HMPREF1058_RS18270 at 219.846 kb on + strand, within HMPREF1058_RS18270 at 219.846 kb on + strand, within HMPREF1058_RS18270 at 219.846 kb on + strand, within HMPREF1058_RS18270 at 219.847 kb on - strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.850 kb on + strand, within HMPREF1058_RS18270 at 219.851 kb on - strand, within HMPREF1058_RS18270 at 219.851 kb on - strand, within HMPREF1058_RS18270 at 219.851 kb on - strand, within HMPREF1058_RS18270 at 219.963 kb on + strand, within HMPREF1058_RS18270 at 219.964 kb on - strand, within HMPREF1058_RS18270 at 220.117 kb on + strand, within HMPREF1058_RS18270 at 220.118 kb on - strand, within HMPREF1058_RS18270 at 220.169 kb on + strand, within HMPREF1058_RS18270 at 220.170 kb on - strand, within HMPREF1058_RS18270 at 220.170 kb on - strand, within HMPREF1058_RS18270 at 220.178 kb on - strand, within HMPREF1058_RS18270 at 220.276 kb on + strand at 220.279 kb on + strand at 220.388 kb on + strand at 220.388 kb on + strand at 220.623 kb on + strand, within HMPREF1058_RS18265 at 220.634 kb on - strand, within HMPREF1058_RS18265 at 220.656 kb on - strand, within HMPREF1058_RS18265 at 220.687 kb on + strand, within HMPREF1058_RS18265 at 220.688 kb on - strand, within HMPREF1058_RS18265 at 220.711 kb on + strand, within HMPREF1058_RS18265 at 220.714 kb on + strand, within HMPREF1058_RS18265 at 220.714 kb on + strand, within HMPREF1058_RS18265 at 220.717 kb on + strand, within HMPREF1058_RS18265 at 220.718 kb on - strand, within HMPREF1058_RS18265 at 220.719 kb on + strand, within HMPREF1058_RS18265 at 220.744 kb on + strand, within HMPREF1058_RS18265 at 220.875 kb on - strand at 220.892 kb on - strand at 220.897 kb on + strand at 220.922 kb on - strand at 220.922 kb on - strand at 220.929 kb on - strand at 220.929 kb on - strand at 221.830 kb on - strand at 221.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 219,548 + HMPREF1058_RS18270 0.57 -1.3 219,548 + HMPREF1058_RS18270 0.57 -0.7 219,750 + HMPREF1058_RS18270 0.67 +0.0 219,846 + HMPREF1058_RS18270 0.72 -0.0 219,846 + HMPREF1058_RS18270 0.72 -1.2 219,846 + HMPREF1058_RS18270 0.72 -0.5 219,847 - HMPREF1058_RS18270 0.72 -0.2 219,850 + HMPREF1058_RS18270 0.72 +0.1 219,850 + HMPREF1058_RS18270 0.72 -0.2 219,850 + HMPREF1058_RS18270 0.72 +0.4 219,850 + HMPREF1058_RS18270 0.72 +0.0 219,851 - HMPREF1058_RS18270 0.72 +0.2 219,851 - HMPREF1058_RS18270 0.72 +3.0 219,851 - HMPREF1058_RS18270 0.72 -0.8 219,963 + HMPREF1058_RS18270 0.78 +0.3 219,964 - HMPREF1058_RS18270 0.78 -1.9 220,117 + HMPREF1058_RS18270 0.85 -1.1 220,118 - HMPREF1058_RS18270 0.85 -0.6 220,169 + HMPREF1058_RS18270 0.88 +9.0 220,170 - HMPREF1058_RS18270 0.88 -0.2 220,170 - HMPREF1058_RS18270 0.88 -0.9 220,178 - HMPREF1058_RS18270 0.88 -1.4 220,276 + -1.0 220,279 + +0.8 220,388 + -0.0 220,388 + +1.2 220,623 + HMPREF1058_RS18265 0.23 +0.3 220,634 - HMPREF1058_RS18265 0.26 +0.1 220,656 - HMPREF1058_RS18265 0.33 -0.9 220,687 + HMPREF1058_RS18265 0.42 +0.4 220,688 - HMPREF1058_RS18265 0.42 -0.4 220,711 + HMPREF1058_RS18265 0.48 +0.3 220,714 + HMPREF1058_RS18265 0.49 -0.9 220,714 + HMPREF1058_RS18265 0.49 -0.6 220,717 + HMPREF1058_RS18265 0.50 -1.2 220,718 - HMPREF1058_RS18265 0.50 +0.6 220,719 + HMPREF1058_RS18265 0.51 +0.7 220,744 + HMPREF1058_RS18265 0.58 -0.7 220,875 - -0.8 220,892 - -0.1 220,897 + -1.4 220,922 - +0.1 220,922 - -0.6 220,929 - +0.1 220,929 - +0.3 221,830 - +3.3 221,850 + -1.6
Or see this region's nucleotide sequence