Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17890 and HMPREF1058_RS17885 are separated by 143 nucleotides HMPREF1058_RS17885 and HMPREF1058_RS17880 are separated by 21 nucleotides HMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides
HMPREF1058_RS17890: HMPREF1058_RS17890 - DUF4301 family protein, at 306,397 to 307,914
_RS17890
HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271
_RS17885
HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646
_RS17880
HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153
_RS17875
Position (kb) 308
309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 307.059 kb on + strand, within HMPREF1058_RS17890 at 307.059 kb on + strand, within HMPREF1058_RS17890 at 307.060 kb on - strand, within HMPREF1058_RS17890 at 307.060 kb on - strand, within HMPREF1058_RS17890 at 307.063 kb on + strand, within HMPREF1058_RS17890 at 307.063 kb on + strand, within HMPREF1058_RS17890 at 307.063 kb on + strand, within HMPREF1058_RS17890 at 307.080 kb on + strand, within HMPREF1058_RS17890 at 307.232 kb on + strand, within HMPREF1058_RS17890 at 307.233 kb on - strand, within HMPREF1058_RS17890 at 307.233 kb on - strand, within HMPREF1058_RS17890 at 307.355 kb on + strand, within HMPREF1058_RS17890 at 307.492 kb on - strand, within HMPREF1058_RS17890 at 307.566 kb on - strand, within HMPREF1058_RS17890 at 307.578 kb on + strand, within HMPREF1058_RS17890 at 307.578 kb on + strand, within HMPREF1058_RS17890 at 307.584 kb on + strand, within HMPREF1058_RS17890 at 307.584 kb on + strand, within HMPREF1058_RS17890 at 307.628 kb on + strand, within HMPREF1058_RS17890 at 307.723 kb on - strand, within HMPREF1058_RS17890 at 307.724 kb on + strand, within HMPREF1058_RS17890 at 307.724 kb on + strand, within HMPREF1058_RS17890 at 307.724 kb on + strand, within HMPREF1058_RS17890 at 307.725 kb on - strand, within HMPREF1058_RS17890 at 307.914 kb on + strand at 307.938 kb on - strand at 307.968 kb on + strand at 307.968 kb on + strand at 308.015 kb on - strand at 308.113 kb on - strand at 308.176 kb on + strand at 308.341 kb on + strand, within HMPREF1058_RS17885 at 308.342 kb on - strand, within HMPREF1058_RS17885 at 308.423 kb on - strand, within HMPREF1058_RS17885 at 308.444 kb on - strand, within HMPREF1058_RS17885 at 308.499 kb on - strand, within HMPREF1058_RS17885 at 308.542 kb on + strand, within HMPREF1058_RS17885 at 308.542 kb on + strand, within HMPREF1058_RS17885 at 308.560 kb on + strand, within HMPREF1058_RS17885 at 308.578 kb on + strand, within HMPREF1058_RS17885 at 308.579 kb on - strand, within HMPREF1058_RS17885 at 308.596 kb on - strand, within HMPREF1058_RS17885 at 308.629 kb on + strand, within HMPREF1058_RS17885 at 308.631 kb on + strand, within HMPREF1058_RS17885 at 308.631 kb on + strand, within HMPREF1058_RS17885 at 308.632 kb on - strand, within HMPREF1058_RS17885 at 308.686 kb on + strand, within HMPREF1058_RS17885 at 308.686 kb on + strand, within HMPREF1058_RS17885 at 308.687 kb on - strand, within HMPREF1058_RS17885 at 308.688 kb on + strand, within HMPREF1058_RS17885 at 308.688 kb on + strand, within HMPREF1058_RS17885 at 308.689 kb on - strand, within HMPREF1058_RS17885 at 308.689 kb on - strand, within HMPREF1058_RS17885 at 308.696 kb on + strand, within HMPREF1058_RS17885 at 308.698 kb on + strand, within HMPREF1058_RS17885 at 308.698 kb on + strand, within HMPREF1058_RS17885 at 308.699 kb on - strand, within HMPREF1058_RS17885 at 308.739 kb on + strand, within HMPREF1058_RS17885 at 308.740 kb on - strand, within HMPREF1058_RS17885 at 308.740 kb on - strand, within HMPREF1058_RS17885 at 308.877 kb on + strand, within HMPREF1058_RS17885 at 308.947 kb on + strand, within HMPREF1058_RS17885 at 308.947 kb on + strand, within HMPREF1058_RS17885 at 308.948 kb on - strand, within HMPREF1058_RS17885 at 308.948 kb on - strand, within HMPREF1058_RS17885 at 308.967 kb on - strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.970 kb on + strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.971 kb on - strand, within HMPREF1058_RS17885 at 308.972 kb on + strand, within HMPREF1058_RS17885 at 309.041 kb on + strand, within HMPREF1058_RS17885 at 309.049 kb on + strand, within HMPREF1058_RS17885 at 309.049 kb on + strand, within HMPREF1058_RS17885 at 309.079 kb on + strand, within HMPREF1058_RS17885 at 309.269 kb on - strand, within HMPREF1058_RS17885 at 309.297 kb on + strand, within HMPREF1058_RS17885 at 309.298 kb on - strand, within HMPREF1058_RS17885 at 309.535 kb on + strand, within HMPREF1058_RS17885 at 309.536 kb on - strand, within HMPREF1058_RS17885 at 309.646 kb on - strand, within HMPREF1058_RS17885 at 309.758 kb on + strand, within HMPREF1058_RS17885 at 309.885 kb on - strand, within HMPREF1058_RS17885 at 309.890 kb on + strand, within HMPREF1058_RS17885 at 309.891 kb on - strand, within HMPREF1058_RS17885 at 309.894 kb on + strand, within HMPREF1058_RS17885 at 309.895 kb on - strand, within HMPREF1058_RS17885 at 309.907 kb on + strand, within HMPREF1058_RS17885 at 309.908 kb on - strand, within HMPREF1058_RS17885 at 309.962 kb on + strand, within HMPREF1058_RS17885 at 310.078 kb on + strand at 310.078 kb on + strand at 310.094 kb on + strand at 310.094 kb on + strand at 310.192 kb on + strand at 310.199 kb on + strand at 310.223 kb on - strand at 310.286 kb on + strand at 310.286 kb on + strand at 310.325 kb on + strand at 310.329 kb on + strand, within HMPREF1058_RS17880 at 310.432 kb on + strand, within HMPREF1058_RS17880 at 310.478 kb on - strand, within HMPREF1058_RS17880 at 310.547 kb on + strand, within HMPREF1058_RS17880 at 310.709 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.765 kb on + strand at 310.766 kb on - strand at 310.777 kb on + strand at 310.851 kb on - strand, within HMPREF1058_RS17875 at 310.851 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.028 kb on - strand, within HMPREF1058_RS17875 at 311.114 kb on - strand at 311.167 kb on + strand at 311.167 kb on + strand at 311.181 kb on + strand at 311.211 kb on - strand at 311.211 kb on - strand at 311.224 kb on - strand at 311.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 307,059 + HMPREF1058_RS17890 0.44 +0.4 307,059 + HMPREF1058_RS17890 0.44 +2.5 307,060 - HMPREF1058_RS17890 0.44 -0.4 307,060 - HMPREF1058_RS17890 0.44 -0.5 307,063 + HMPREF1058_RS17890 0.44 +1.0 307,063 + HMPREF1058_RS17890 0.44 -0.4 307,063 + HMPREF1058_RS17890 0.44 -0.1 307,080 + HMPREF1058_RS17890 0.45 -0.5 307,232 + HMPREF1058_RS17890 0.55 +1.0 307,233 - HMPREF1058_RS17890 0.55 -0.5 307,233 - HMPREF1058_RS17890 0.55 -1.3 307,355 + HMPREF1058_RS17890 0.63 -0.3 307,492 - HMPREF1058_RS17890 0.72 -0.9 307,566 - HMPREF1058_RS17890 0.77 +1.3 307,578 + HMPREF1058_RS17890 0.78 +0.6 307,578 + HMPREF1058_RS17890 0.78 -0.1 307,584 + HMPREF1058_RS17890 0.78 -1.6 307,584 + HMPREF1058_RS17890 0.78 -1.8 307,628 + HMPREF1058_RS17890 0.81 +0.8 307,723 - HMPREF1058_RS17890 0.87 -1.1 307,724 + HMPREF1058_RS17890 0.87 -1.2 307,724 + HMPREF1058_RS17890 0.87 +1.4 307,724 + HMPREF1058_RS17890 0.87 +0.0 307,725 - HMPREF1058_RS17890 0.87 -1.8 307,914 + +0.1 307,938 - -0.6 307,968 + +0.2 307,968 + +0.6 308,015 - +1.0 308,113 - -1.4 308,176 + -2.8 308,341 + HMPREF1058_RS17885 0.13 +0.6 308,342 - HMPREF1058_RS17885 0.13 -1.2 308,423 - HMPREF1058_RS17885 0.16 +0.9 308,444 - HMPREF1058_RS17885 0.17 -0.3 308,499 - HMPREF1058_RS17885 0.20 +0.7 308,542 + HMPREF1058_RS17885 0.22 -2.4 308,542 + HMPREF1058_RS17885 0.22 -1.0 308,560 + HMPREF1058_RS17885 0.23 -0.1 308,578 + HMPREF1058_RS17885 0.23 +0.3 308,579 - HMPREF1058_RS17885 0.24 -0.1 308,596 - HMPREF1058_RS17885 0.24 +0.5 308,629 + HMPREF1058_RS17885 0.26 -2.7 308,631 + HMPREF1058_RS17885 0.26 -0.9 308,631 + HMPREF1058_RS17885 0.26 -3.1 308,632 - HMPREF1058_RS17885 0.26 -0.1 308,686 + HMPREF1058_RS17885 0.28 -1.7 308,686 + HMPREF1058_RS17885 0.28 +0.7 308,687 - HMPREF1058_RS17885 0.28 -1.0 308,688 + HMPREF1058_RS17885 0.28 +0.4 308,688 + HMPREF1058_RS17885 0.28 -0.9 308,689 - HMPREF1058_RS17885 0.29 +2.3 308,689 - HMPREF1058_RS17885 0.29 -1.3 308,696 + HMPREF1058_RS17885 0.29 +0.0 308,698 + HMPREF1058_RS17885 0.29 -2.1 308,698 + HMPREF1058_RS17885 0.29 +1.5 308,699 - HMPREF1058_RS17885 0.29 +2.7 308,739 + HMPREF1058_RS17885 0.31 -2.1 308,740 - HMPREF1058_RS17885 0.31 -2.6 308,740 - HMPREF1058_RS17885 0.31 -0.1 308,877 + HMPREF1058_RS17885 0.37 -1.8 308,947 + HMPREF1058_RS17885 0.40 -2.6 308,947 + HMPREF1058_RS17885 0.40 -2.4 308,948 - HMPREF1058_RS17885 0.40 +1.3 308,948 - HMPREF1058_RS17885 0.40 -1.3 308,967 - HMPREF1058_RS17885 0.41 +1.7 308,970 + HMPREF1058_RS17885 0.41 +0.9 308,970 + HMPREF1058_RS17885 0.41 -1.4 308,970 + HMPREF1058_RS17885 0.41 -1.3 308,970 + HMPREF1058_RS17885 0.41 -2.6 308,970 + HMPREF1058_RS17885 0.41 -1.1 308,970 + HMPREF1058_RS17885 0.41 -1.7 308,970 + HMPREF1058_RS17885 0.41 -0.1 308,970 + HMPREF1058_RS17885 0.41 -2.3 308,970 + HMPREF1058_RS17885 0.41 +0.9 308,971 - HMPREF1058_RS17885 0.41 -2.4 308,971 - HMPREF1058_RS17885 0.41 -0.2 308,971 - HMPREF1058_RS17885 0.41 +0.4 308,971 - HMPREF1058_RS17885 0.41 -0.4 308,972 + HMPREF1058_RS17885 0.41 -2.6 309,041 + HMPREF1058_RS17885 0.44 -0.5 309,049 + HMPREF1058_RS17885 0.45 -0.4 309,049 + HMPREF1058_RS17885 0.45 -2.6 309,079 + HMPREF1058_RS17885 0.46 +1.0 309,269 - HMPREF1058_RS17885 0.55 -0.8 309,297 + HMPREF1058_RS17885 0.56 -2.6 309,298 - HMPREF1058_RS17885 0.56 +0.2 309,535 + HMPREF1058_RS17885 0.67 -1.8 309,536 - HMPREF1058_RS17885 0.67 -2.2 309,646 - HMPREF1058_RS17885 0.72 +1.1 309,758 + HMPREF1058_RS17885 0.77 -4.2 309,885 - HMPREF1058_RS17885 0.83 +0.4 309,890 + HMPREF1058_RS17885 0.83 -2.3 309,891 - HMPREF1058_RS17885 0.83 -0.2 309,894 + HMPREF1058_RS17885 0.83 -3.4 309,895 - HMPREF1058_RS17885 0.83 +1.3 309,907 + HMPREF1058_RS17885 0.84 -3.0 309,908 - HMPREF1058_RS17885 0.84 +0.2 309,962 + HMPREF1058_RS17885 0.86 -1.9 310,078 + -2.5 310,078 + -1.0 310,094 + +0.7 310,094 + -2.3 310,192 + -0.5 310,199 + -1.8 310,223 - -2.7 310,286 + +0.3 310,286 + -2.0 310,325 + +0.5 310,329 + HMPREF1058_RS17880 0.10 -1.3 310,432 + HMPREF1058_RS17880 0.39 +0.8 310,478 - HMPREF1058_RS17880 0.52 +1.7 310,547 + HMPREF1058_RS17880 0.72 -1.1 310,709 + +0.9 310,738 + +0.7 310,738 + +1.0 310,738 + +0.0 310,765 + +0.6 310,766 - +0.4 310,777 + -0.7 310,851 - HMPREF1058_RS17875 0.27 +0.0 310,851 - HMPREF1058_RS17875 0.27 -1.5 311,026 - HMPREF1058_RS17875 0.69 +0.2 311,026 - HMPREF1058_RS17875 0.69 +2.7 311,028 - HMPREF1058_RS17875 0.70 +2.7 311,114 - -0.1 311,167 + +0.8 311,167 + +1.8 311,181 + -0.9 311,211 - +0.1 311,211 - -1.9 311,224 - +1.7 311,262 + -0.9
Or see this region's nucleotide sequence