Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17855 and HMPREF1058_RS17850 are separated by 450 nucleotides HMPREF1058_RS17850 and HMPREF1058_RS17845 are separated by 206 nucleotides HMPREF1058_RS17845 and HMPREF1058_RS17840 are separated by 74 nucleotides
HMPREF1058_RS17855: HMPREF1058_RS17855 - alpha/beta hydrolase, at 315,006 to 315,851
_RS17855
HMPREF1058_RS17850: HMPREF1058_RS17850 - ferritin, at 316,302 to 316,784
_RS17850
HMPREF1058_RS17845: HMPREF1058_RS17845 - 30S ribosomal protein S16, at 316,991 to 317,542
_RS17845
HMPREF1058_RS17840: HMPREF1058_RS17840 - Rpn family recombination-promoting nuclease/putative transposase, at 317,617 to 318,474
_RS17840
Position (kb) 316
317 Strain fitness (log2 ratio) -2
-1
0
1
2 at 315.314 kb on - strand, within HMPREF1058_RS17855 at 315.314 kb on - strand, within HMPREF1058_RS17855 at 315.349 kb on + strand, within HMPREF1058_RS17855 at 315.350 kb on - strand, within HMPREF1058_RS17855 at 315.479 kb on + strand, within HMPREF1058_RS17855 at 315.480 kb on - strand, within HMPREF1058_RS17855 at 315.706 kb on - strand, within HMPREF1058_RS17855 at 315.754 kb on - strand, within HMPREF1058_RS17855 at 315.754 kb on - strand, within HMPREF1058_RS17855 at 315.795 kb on - strand at 315.799 kb on - strand at 315.800 kb on + strand at 315.909 kb on - strand at 315.909 kb on - strand at 315.917 kb on + strand at 315.918 kb on - strand at 315.976 kb on + strand at 315.988 kb on + strand at 315.989 kb on - strand at 315.989 kb on - strand at 316.114 kb on + strand at 316.115 kb on - strand at 316.116 kb on + strand at 316.116 kb on + strand at 316.117 kb on - strand at 316.117 kb on - strand at 316.177 kb on - strand at 316.200 kb on + strand at 316.261 kb on - strand at 316.388 kb on + strand, within HMPREF1058_RS17850 at 316.471 kb on - strand, within HMPREF1058_RS17850 at 316.514 kb on - strand, within HMPREF1058_RS17850 at 316.515 kb on + strand, within HMPREF1058_RS17850 at 316.516 kb on - strand, within HMPREF1058_RS17850 at 316.516 kb on - strand, within HMPREF1058_RS17850 at 316.714 kb on + strand, within HMPREF1058_RS17850 at 316.754 kb on + strand at 316.755 kb on - strand at 316.848 kb on + strand at 317.707 kb on - strand, within HMPREF1058_RS17840 at 317.751 kb on + strand, within HMPREF1058_RS17840 at 317.758 kb on - strand, within HMPREF1058_RS17840
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 315,314 - HMPREF1058_RS17855 0.36 -1.1 315,314 - HMPREF1058_RS17855 0.36 -1.5 315,349 + HMPREF1058_RS17855 0.41 +1.5 315,350 - HMPREF1058_RS17855 0.41 -0.6 315,479 + HMPREF1058_RS17855 0.56 +2.2 315,480 - HMPREF1058_RS17855 0.56 -0.5 315,706 - HMPREF1058_RS17855 0.83 -0.6 315,754 - HMPREF1058_RS17855 0.88 -0.5 315,754 - HMPREF1058_RS17855 0.88 +0.6 315,795 - +0.6 315,799 - +2.2 315,800 + -1.0 315,909 - -0.1 315,909 - -1.8 315,917 + +1.4 315,918 - -0.8 315,976 + -0.6 315,988 + -0.4 315,989 - -0.0 315,989 - +0.2 316,114 + -0.6 316,115 - +0.2 316,116 + +1.2 316,116 + +0.0 316,117 - -0.4 316,117 - +0.7 316,177 - -0.4 316,200 + -0.4 316,261 - -0.4 316,388 + HMPREF1058_RS17850 0.18 -0.7 316,471 - HMPREF1058_RS17850 0.35 -2.1 316,514 - HMPREF1058_RS17850 0.44 -1.1 316,515 + HMPREF1058_RS17850 0.44 -0.9 316,516 - HMPREF1058_RS17850 0.44 +0.1 316,516 - HMPREF1058_RS17850 0.44 -2.3 316,714 + HMPREF1058_RS17850 0.85 -0.2 316,754 + +0.6 316,755 - +1.3 316,848 + -0.4 317,707 - HMPREF1058_RS17840 0.10 +0.0 317,751 + HMPREF1058_RS17840 0.16 -0.8 317,758 - HMPREF1058_RS17840 0.16 -0.1
Or see this region's nucleotide sequence