Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17610 and HMPREF1058_RS17605 are separated by 39 nucleotides HMPREF1058_RS17605 and HMPREF1058_RS17600 are separated by 132 nucleotides HMPREF1058_RS17600 and HMPREF1058_RS17595 are separated by 191 nucleotides HMPREF1058_RS17595 and HMPREF1058_RS17590 are separated by 24 nucleotides
HMPREF1058_RS17610: HMPREF1058_RS17610 - DUF47 domain-containing protein, at 388,257 to 388,904
_RS17610
HMPREF1058_RS17605: HMPREF1058_RS17605 - DedA family protein, at 388,944 to 389,588
_RS17605
HMPREF1058_RS17600: HMPREF1058_RS17600 - hypothetical protein, at 389,721 to 390,146
_RS17600
HMPREF1058_RS17595: HMPREF1058_RS17595 - Lrp/AsnC family transcriptional regulator, at 390,338 to 390,808
_RS17595
HMPREF1058_RS17590: HMPREF1058_RS17590 - magnesium/cobalt transporter CorA, at 390,833 to 391,873
_RS17590
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 388.760 kb on - strand, within HMPREF1058_RS17610 at 388.946 kb on - strand at 388.968 kb on - strand at 388.977 kb on + strand at 389.000 kb on + strand at 389.016 kb on - strand, within HMPREF1058_RS17605 at 389.047 kb on - strand, within HMPREF1058_RS17605 at 389.090 kb on + strand, within HMPREF1058_RS17605 at 389.121 kb on - strand, within HMPREF1058_RS17605 at 389.123 kb on - strand, within HMPREF1058_RS17605 at 389.187 kb on + strand, within HMPREF1058_RS17605 at 389.188 kb on - strand, within HMPREF1058_RS17605 at 389.189 kb on + strand, within HMPREF1058_RS17605 at 389.274 kb on + strand, within HMPREF1058_RS17605 at 389.274 kb on + strand, within HMPREF1058_RS17605 at 389.275 kb on - strand, within HMPREF1058_RS17605 at 389.304 kb on - strand, within HMPREF1058_RS17605 at 389.327 kb on + strand, within HMPREF1058_RS17605 at 389.382 kb on - strand, within HMPREF1058_RS17605 at 389.385 kb on - strand, within HMPREF1058_RS17605 at 389.495 kb on + strand, within HMPREF1058_RS17605 at 389.509 kb on + strand, within HMPREF1058_RS17605 at 389.519 kb on + strand, within HMPREF1058_RS17605 at 389.537 kb on + strand at 389.538 kb on - strand at 389.538 kb on - strand at 389.547 kb on - strand at 389.567 kb on + strand at 389.591 kb on + strand at 389.591 kb on + strand at 389.592 kb on - strand at 389.592 kb on - strand at 389.594 kb on - strand at 389.594 kb on - strand at 389.600 kb on + strand at 389.603 kb on + strand at 389.604 kb on - strand at 389.608 kb on + strand at 389.609 kb on - strand at 389.611 kb on - strand at 389.681 kb on - strand at 389.681 kb on - strand at 389.718 kb on - strand at 389.750 kb on + strand at 389.752 kb on + strand at 389.753 kb on - strand at 389.775 kb on - strand, within HMPREF1058_RS17600 at 389.780 kb on - strand, within HMPREF1058_RS17600 at 389.786 kb on + strand, within HMPREF1058_RS17600 at 389.919 kb on - strand, within HMPREF1058_RS17600 at 389.945 kb on - strand, within HMPREF1058_RS17600 at 389.968 kb on - strand, within HMPREF1058_RS17600 at 389.993 kb on + strand, within HMPREF1058_RS17600 at 389.994 kb on - strand, within HMPREF1058_RS17600 at 390.008 kb on + strand, within HMPREF1058_RS17600 at 390.106 kb on - strand at 390.106 kb on - strand at 390.119 kb on + strand at 390.120 kb on - strand at 390.122 kb on - strand at 390.130 kb on + strand at 390.131 kb on - strand at 390.131 kb on - strand at 390.132 kb on + strand at 390.132 kb on + strand at 390.132 kb on + strand at 390.135 kb on - strand at 390.135 kb on - strand at 390.135 kb on - strand at 390.137 kb on - strand at 390.137 kb on - strand at 390.146 kb on + strand at 390.228 kb on + strand at 390.228 kb on + strand at 390.239 kb on + strand at 390.239 kb on + strand at 390.240 kb on - strand at 390.267 kb on + strand at 390.283 kb on + strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.308 kb on - strand at 390.333 kb on - strand at 390.343 kb on + strand at 390.382 kb on - strand at 390.386 kb on - strand, within HMPREF1058_RS17595 at 390.386 kb on - strand, within HMPREF1058_RS17595 at 390.491 kb on + strand, within HMPREF1058_RS17595 at 390.491 kb on + strand, within HMPREF1058_RS17595 at 390.492 kb on - strand, within HMPREF1058_RS17595 at 390.567 kb on + strand, within HMPREF1058_RS17595 at 390.609 kb on + strand, within HMPREF1058_RS17595 at 390.630 kb on + strand, within HMPREF1058_RS17595 at 390.641 kb on + strand, within HMPREF1058_RS17595 at 390.642 kb on - strand, within HMPREF1058_RS17595 at 390.642 kb on - strand, within HMPREF1058_RS17595 at 390.666 kb on - strand, within HMPREF1058_RS17595 at 390.678 kb on + strand, within HMPREF1058_RS17595 at 390.698 kb on + strand, within HMPREF1058_RS17595 at 390.699 kb on - strand, within HMPREF1058_RS17595 at 390.806 kb on + strand at 390.811 kb on - strand at 390.853 kb on + strand at 390.864 kb on + strand at 390.865 kb on - strand at 390.869 kb on - strand at 390.869 kb on - strand at 390.882 kb on - strand at 390.905 kb on + strand at 390.906 kb on - strand at 390.906 kb on - strand at 390.909 kb on + strand at 390.910 kb on - strand at 390.989 kb on + strand, within HMPREF1058_RS17590 at 390.990 kb on - strand, within HMPREF1058_RS17590 at 390.992 kb on - strand, within HMPREF1058_RS17590 at 390.994 kb on + strand, within HMPREF1058_RS17590 at 390.995 kb on - strand, within HMPREF1058_RS17590 at 391.053 kb on + strand, within HMPREF1058_RS17590 at 391.053 kb on + strand, within HMPREF1058_RS17590 at 391.054 kb on - strand, within HMPREF1058_RS17590 at 391.057 kb on + strand, within HMPREF1058_RS17590 at 391.061 kb on + strand, within HMPREF1058_RS17590 at 391.095 kb on - strand, within HMPREF1058_RS17590
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 388,760 - HMPREF1058_RS17610 0.78 -0.1 388,946 - +0.0 388,968 - +2.1 388,977 + +1.8 389,000 + +0.2 389,016 - HMPREF1058_RS17605 0.11 +0.2 389,047 - HMPREF1058_RS17605 0.16 -0.0 389,090 + HMPREF1058_RS17605 0.23 -1.4 389,121 - HMPREF1058_RS17605 0.27 -2.0 389,123 - HMPREF1058_RS17605 0.28 +1.0 389,187 + HMPREF1058_RS17605 0.38 -1.0 389,188 - HMPREF1058_RS17605 0.38 -1.2 389,189 + HMPREF1058_RS17605 0.38 +0.0 389,274 + HMPREF1058_RS17605 0.51 -0.6 389,274 + HMPREF1058_RS17605 0.51 +0.4 389,275 - HMPREF1058_RS17605 0.51 +1.0 389,304 - HMPREF1058_RS17605 0.56 -1.8 389,327 + HMPREF1058_RS17605 0.59 +0.1 389,382 - HMPREF1058_RS17605 0.68 -1.2 389,385 - HMPREF1058_RS17605 0.68 -0.3 389,495 + HMPREF1058_RS17605 0.85 -0.4 389,509 + HMPREF1058_RS17605 0.88 -1.4 389,519 + HMPREF1058_RS17605 0.89 +1.0 389,537 + +3.3 389,538 - +0.2 389,538 - -0.8 389,547 - -0.6 389,567 + -0.4 389,591 + -3.5 389,591 + -1.6 389,592 - -1.2 389,592 - -2.0 389,594 - -2.1 389,594 - +0.6 389,600 + -0.4 389,603 + +1.2 389,604 - +1.5 389,608 + -0.9 389,609 - +0.2 389,611 - +1.0 389,681 - +0.7 389,681 - -1.6 389,718 - +0.1 389,750 + -1.5 389,752 + +0.3 389,753 - +0.2 389,775 - HMPREF1058_RS17600 0.13 +0.2 389,780 - HMPREF1058_RS17600 0.14 -0.6 389,786 + HMPREF1058_RS17600 0.15 -1.9 389,919 - HMPREF1058_RS17600 0.46 -0.2 389,945 - HMPREF1058_RS17600 0.53 -0.2 389,968 - HMPREF1058_RS17600 0.58 -1.3 389,993 + HMPREF1058_RS17600 0.64 -1.4 389,994 - HMPREF1058_RS17600 0.64 -1.0 390,008 + HMPREF1058_RS17600 0.67 -0.1 390,106 - +0.0 390,106 - -0.0 390,119 + +1.0 390,120 - +0.6 390,122 - +1.0 390,130 + -0.7 390,131 - -0.5 390,131 - -2.2 390,132 + -0.7 390,132 + +1.1 390,132 + -0.4 390,135 - -1.2 390,135 - -0.8 390,135 - -1.5 390,137 - -2.2 390,137 - +0.7 390,146 + -1.8 390,228 + +0.8 390,228 + -0.3 390,239 + +3.3 390,239 + +0.2 390,240 - -1.3 390,267 + -0.6 390,283 + +0.3 390,284 - +1.5 390,284 - +0.9 390,308 - +0.0 390,333 - -1.7 390,343 + -0.5 390,382 - -1.8 390,386 - HMPREF1058_RS17595 0.10 +0.2 390,386 - HMPREF1058_RS17595 0.10 +0.7 390,491 + HMPREF1058_RS17595 0.32 -0.9 390,491 + HMPREF1058_RS17595 0.32 -0.4 390,492 - HMPREF1058_RS17595 0.33 +1.6 390,567 + HMPREF1058_RS17595 0.49 -0.0 390,609 + HMPREF1058_RS17595 0.58 +0.1 390,630 + HMPREF1058_RS17595 0.62 -1.0 390,641 + HMPREF1058_RS17595 0.64 -1.0 390,642 - HMPREF1058_RS17595 0.65 -0.7 390,642 - HMPREF1058_RS17595 0.65 +0.3 390,666 - HMPREF1058_RS17595 0.70 -0.8 390,678 + HMPREF1058_RS17595 0.72 +0.2 390,698 + HMPREF1058_RS17595 0.76 -0.7 390,699 - HMPREF1058_RS17595 0.77 -0.2 390,806 + -1.2 390,811 - -0.4 390,853 + +1.9 390,864 + -0.4 390,865 - +0.5 390,869 - -1.5 390,869 - +0.1 390,882 - -0.8 390,905 + -1.7 390,906 - +0.0 390,906 - -0.1 390,909 + +2.9 390,910 - +0.7 390,989 + HMPREF1058_RS17590 0.15 +0.2 390,990 - HMPREF1058_RS17590 0.15 +0.7 390,992 - HMPREF1058_RS17590 0.15 -0.2 390,994 + HMPREF1058_RS17590 0.15 +1.5 390,995 - HMPREF1058_RS17590 0.16 +0.1 391,053 + HMPREF1058_RS17590 0.21 +1.7 391,053 + HMPREF1058_RS17590 0.21 +0.1 391,054 - HMPREF1058_RS17590 0.21 -0.4 391,057 + HMPREF1058_RS17590 0.22 +2.7 391,061 + HMPREF1058_RS17590 0.22 -0.6 391,095 - HMPREF1058_RS17590 0.25 -1.9
Or see this region's nucleotide sequence