Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17590 and HMPREF1058_RS17585 are separated by 474 nucleotides HMPREF1058_RS17585 and HMPREF1058_RS17580 are separated by 166 nucleotides HMPREF1058_RS17580 and HMPREF1058_RS17575 are separated by 12 nucleotides HMPREF1058_RS17575 and HMPREF1058_RS17570 are separated by 212 nucleotides
HMPREF1058_RS17590: HMPREF1058_RS17590 - magnesium/cobalt transporter CorA, at 390,833 to 391,873
_RS17590
HMPREF1058_RS17585: HMPREF1058_RS17585 - helix-turn-helix transcriptional regulator, at 392,348 to 392,701
_RS17585
HMPREF1058_RS17580: HMPREF1058_RS17580 - dihydrofolate reductase, at 392,868 to 393,365
_RS17580
HMPREF1058_RS17575: HMPREF1058_RS17575 - SagB/ThcOx family dehydrogenase, at 393,378 to 394,016
_RS17575
HMPREF1058_RS17570: HMPREF1058_RS17570 - RteC domain-containing protein, at 394,229 to 395,089
_RS17570
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 391.893 kb on - strand at 391.893 kb on - strand at 391.901 kb on - strand at 392.116 kb on - strand at 392.216 kb on - strand at 392.233 kb on + strand at 392.234 kb on - strand at 392.251 kb on - strand at 392.283 kb on + strand at 392.286 kb on - strand at 392.289 kb on + strand at 392.289 kb on + strand at 392.290 kb on - strand at 392.290 kb on - strand at 392.290 kb on - strand at 392.291 kb on + strand at 392.291 kb on + strand at 392.291 kb on + strand at 392.295 kb on + strand at 392.296 kb on - strand at 392.333 kb on - strand at 392.339 kb on + strand at 392.342 kb on - strand at 392.455 kb on - strand, within HMPREF1058_RS17585 at 392.476 kb on + strand at 392.480 kb on - strand, within HMPREF1058_RS17585 at 392.481 kb on + strand, within HMPREF1058_RS17585 at 392.548 kb on + strand, within HMPREF1058_RS17585 at 392.551 kb on + strand, within HMPREF1058_RS17585 at 392.552 kb on - strand, within HMPREF1058_RS17585 at 392.585 kb on - strand, within HMPREF1058_RS17585 at 392.585 kb on - strand, within HMPREF1058_RS17585 at 392.586 kb on + strand, within HMPREF1058_RS17585 at 392.614 kb on + strand, within HMPREF1058_RS17585 at 392.615 kb on - strand, within HMPREF1058_RS17585 at 392.617 kb on + strand, within HMPREF1058_RS17585 at 392.618 kb on - strand, within HMPREF1058_RS17585 at 392.658 kb on - strand, within HMPREF1058_RS17585 at 392.701 kb on + strand at 392.704 kb on - strand at 392.704 kb on - strand at 392.742 kb on - strand at 392.788 kb on - strand at 392.793 kb on - strand at 392.842 kb on - strand at 392.848 kb on - strand at 392.875 kb on + strand at 392.942 kb on - strand, within HMPREF1058_RS17580 at 393.015 kb on + strand, within HMPREF1058_RS17580 at 393.015 kb on + strand, within HMPREF1058_RS17580 at 393.017 kb on + strand, within HMPREF1058_RS17580 at 393.018 kb on - strand, within HMPREF1058_RS17580 at 393.018 kb on - strand, within HMPREF1058_RS17580 at 393.231 kb on + strand, within HMPREF1058_RS17580 at 393.232 kb on - strand, within HMPREF1058_RS17580 at 393.318 kb on + strand at 393.364 kb on - strand at 393.417 kb on - strand at 393.417 kb on - strand at 393.417 kb on - strand at 393.419 kb on - strand at 393.485 kb on + strand, within HMPREF1058_RS17575 at 393.652 kb on + strand, within HMPREF1058_RS17575 at 393.652 kb on + strand, within HMPREF1058_RS17575 at 393.653 kb on - strand, within HMPREF1058_RS17575 at 393.653 kb on - strand, within HMPREF1058_RS17575 at 393.654 kb on + strand, within HMPREF1058_RS17575 at 393.654 kb on + strand, within HMPREF1058_RS17575 at 393.654 kb on + strand, within HMPREF1058_RS17575 at 393.654 kb on + strand, within HMPREF1058_RS17575 at 393.654 kb on + strand, within HMPREF1058_RS17575 at 393.655 kb on - strand, within HMPREF1058_RS17575 at 393.658 kb on + strand, within HMPREF1058_RS17575 at 393.658 kb on + strand, within HMPREF1058_RS17575 at 393.658 kb on + strand, within HMPREF1058_RS17575 at 393.658 kb on + strand, within HMPREF1058_RS17575 at 393.659 kb on - strand, within HMPREF1058_RS17575 at 393.659 kb on - strand, within HMPREF1058_RS17575 at 393.659 kb on - strand, within HMPREF1058_RS17575 at 393.707 kb on - strand, within HMPREF1058_RS17575 at 393.778 kb on + strand, within HMPREF1058_RS17575 at 393.778 kb on + strand, within HMPREF1058_RS17575 at 393.778 kb on + strand, within HMPREF1058_RS17575 at 393.916 kb on + strand, within HMPREF1058_RS17575 at 393.942 kb on - strand, within HMPREF1058_RS17575 at 393.988 kb on + strand at 394.014 kb on + strand at 394.082 kb on - strand at 394.104 kb on - strand at 394.147 kb on + strand at 394.153 kb on - strand at 394.158 kb on + strand at 394.163 kb on + strand at 394.163 kb on + strand at 394.163 kb on + strand at 394.163 kb on + strand at 394.209 kb on + strand at 394.214 kb on - strand at 394.219 kb on + strand at 394.252 kb on - strand at 394.315 kb on + strand, within HMPREF1058_RS17570 at 394.316 kb on - strand, within HMPREF1058_RS17570 at 394.316 kb on - strand, within HMPREF1058_RS17570 at 394.317 kb on + strand, within HMPREF1058_RS17570 at 394.317 kb on + strand, within HMPREF1058_RS17570 at 394.318 kb on - strand, within HMPREF1058_RS17570
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 391,893 - +1.2 391,893 - +0.8 391,901 - +0.2 392,116 - +0.3 392,216 - -0.7 392,233 + -2.2 392,234 - -0.2 392,251 - -0.8 392,283 + -0.9 392,286 - -0.8 392,289 + -0.7 392,289 + +1.0 392,290 - +0.4 392,290 - -0.0 392,290 - -1.1 392,291 + -1.8 392,291 + -0.8 392,291 + -0.2 392,295 + +1.1 392,296 - -0.7 392,333 - -0.8 392,339 + -1.0 392,342 - -0.6 392,455 - HMPREF1058_RS17585 0.30 -0.3 392,476 + -0.2 392,480 - HMPREF1058_RS17585 0.37 -0.6 392,481 + HMPREF1058_RS17585 0.38 -0.6 392,548 + HMPREF1058_RS17585 0.56 -0.5 392,551 + HMPREF1058_RS17585 0.57 +2.0 392,552 - HMPREF1058_RS17585 0.58 -1.2 392,585 - HMPREF1058_RS17585 0.67 -1.1 392,585 - HMPREF1058_RS17585 0.67 -1.2 392,586 + HMPREF1058_RS17585 0.67 -1.0 392,614 + HMPREF1058_RS17585 0.75 +0.3 392,615 - HMPREF1058_RS17585 0.75 +1.5 392,617 + HMPREF1058_RS17585 0.76 -0.9 392,618 - HMPREF1058_RS17585 0.76 -0.5 392,658 - HMPREF1058_RS17585 0.88 -0.4 392,701 + +1.0 392,704 - +1.4 392,704 - +2.0 392,742 - -0.9 392,788 - -0.4 392,793 - -0.6 392,842 - +1.1 392,848 - -0.2 392,875 + +0.7 392,942 - HMPREF1058_RS17580 0.15 +0.2 393,015 + HMPREF1058_RS17580 0.30 -1.9 393,015 + HMPREF1058_RS17580 0.30 +0.5 393,017 + HMPREF1058_RS17580 0.30 -0.4 393,018 - HMPREF1058_RS17580 0.30 +0.3 393,018 - HMPREF1058_RS17580 0.30 -0.4 393,231 + HMPREF1058_RS17580 0.73 -1.7 393,232 - HMPREF1058_RS17580 0.73 -0.3 393,318 + +0.2 393,364 - -0.6 393,417 - -1.4 393,417 - +0.5 393,417 - -0.5 393,419 - +3.0 393,485 + HMPREF1058_RS17575 0.17 -0.8 393,652 + HMPREF1058_RS17575 0.43 -1.2 393,652 + HMPREF1058_RS17575 0.43 -2.4 393,653 - HMPREF1058_RS17575 0.43 +1.5 393,653 - HMPREF1058_RS17575 0.43 +2.8 393,654 + HMPREF1058_RS17575 0.43 -1.3 393,654 + HMPREF1058_RS17575 0.43 +0.6 393,654 + HMPREF1058_RS17575 0.43 -0.2 393,654 + HMPREF1058_RS17575 0.43 +0.5 393,654 + HMPREF1058_RS17575 0.43 -0.2 393,655 - HMPREF1058_RS17575 0.43 +0.8 393,658 + HMPREF1058_RS17575 0.44 -0.6 393,658 + HMPREF1058_RS17575 0.44 +0.5 393,658 + HMPREF1058_RS17575 0.44 -0.7 393,658 + HMPREF1058_RS17575 0.44 -1.7 393,659 - HMPREF1058_RS17575 0.44 -0.8 393,659 - HMPREF1058_RS17575 0.44 -1.5 393,659 - HMPREF1058_RS17575 0.44 -1.6 393,707 - HMPREF1058_RS17575 0.51 +0.8 393,778 + HMPREF1058_RS17575 0.63 +0.1 393,778 + HMPREF1058_RS17575 0.63 +2.0 393,778 + HMPREF1058_RS17575 0.63 +1.1 393,916 + HMPREF1058_RS17575 0.84 +1.0 393,942 - HMPREF1058_RS17575 0.88 +1.3 393,988 + +1.1 394,014 + +1.3 394,082 - +0.8 394,104 - +0.3 394,147 + -0.4 394,153 - -0.7 394,158 + -0.1 394,163 + -0.5 394,163 + +4.3 394,163 + +0.3 394,163 + -1.7 394,209 + +1.1 394,214 - -1.7 394,219 + -0.5 394,252 - -1.3 394,315 + HMPREF1058_RS17570 0.10 +0.5 394,316 - HMPREF1058_RS17570 0.10 +0.1 394,316 - HMPREF1058_RS17570 0.10 -0.2 394,317 + HMPREF1058_RS17570 0.10 -0.2 394,317 + HMPREF1058_RS17570 0.10 -0.2 394,318 - HMPREF1058_RS17570 0.10 -1.8
Or see this region's nucleotide sequence