Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17215 and HMPREF1058_RS17210 are separated by 111 nucleotides HMPREF1058_RS17210 and HMPREF1058_RS17205 are separated by 259 nucleotides HMPREF1058_RS17205 and HMPREF1058_RS17200 are separated by 3 nucleotides HMPREF1058_RS17200 and HMPREF1058_RS17195 are separated by 1 nucleotides
HMPREF1058_RS17215: HMPREF1058_RS17215 - DEAD/DEAH box helicase, at 501,709 to 504,126
_RS17215
HMPREF1058_RS17210: HMPREF1058_RS17210 - tRNA-Thr, at 504,238 to 504,311
_RS17210
HMPREF1058_RS17205: HMPREF1058_RS17205 - DUF4199 domain-containing protein, at 504,571 to 505,104
_RS17205
HMPREF1058_RS17200: HMPREF1058_RS17200 - glycosyltransferase family 2 protein, at 505,108 to 506,061
_RS17200
HMPREF1058_RS17195: HMPREF1058_RS17195 - hypothetical protein, at 506,063 to 506,611
_RS17195
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 503.608 kb on + strand, within HMPREF1058_RS17215 at 503.609 kb on - strand, within HMPREF1058_RS17215 at 503.615 kb on + strand, within HMPREF1058_RS17215 at 503.692 kb on + strand, within HMPREF1058_RS17215 at 503.732 kb on + strand, within HMPREF1058_RS17215 at 503.963 kb on - strand at 504.088 kb on - strand at 504.141 kb on - strand at 504.141 kb on - strand at 504.153 kb on + strand at 504.168 kb on + strand at 504.183 kb on + strand at 504.183 kb on + strand at 504.185 kb on + strand at 504.515 kb on + strand at 504.515 kb on + strand at 504.519 kb on + strand at 504.519 kb on + strand at 504.713 kb on + strand, within HMPREF1058_RS17205 at 504.817 kb on + strand, within HMPREF1058_RS17205 at 504.817 kb on + strand, within HMPREF1058_RS17205 at 504.817 kb on + strand, within HMPREF1058_RS17205 at 504.819 kb on + strand, within HMPREF1058_RS17205 at 504.983 kb on + strand, within HMPREF1058_RS17205 at 506.073 kb on + strand at 506.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 503,608 + HMPREF1058_RS17215 0.79 -1.1 503,609 - HMPREF1058_RS17215 0.79 -1.1 503,615 + HMPREF1058_RS17215 0.79 -0.7 503,692 + HMPREF1058_RS17215 0.82 -1.7 503,732 + HMPREF1058_RS17215 0.84 -1.6 503,963 - -1.2 504,088 - -2.2 504,141 - -0.2 504,141 - -1.6 504,153 + +1.0 504,168 + -1.6 504,183 + -1.5 504,183 + -0.5 504,185 + +1.4 504,515 + +0.7 504,515 + +2.0 504,519 + -0.4 504,519 + -0.5 504,713 + HMPREF1058_RS17205 0.27 +0.0 504,817 + HMPREF1058_RS17205 0.46 -0.1 504,817 + HMPREF1058_RS17205 0.46 -0.5 504,817 + HMPREF1058_RS17205 0.46 -1.4 504,819 + HMPREF1058_RS17205 0.46 +0.3 504,983 + HMPREF1058_RS17205 0.77 -1.0 506,073 + +3.4 506,083 + +0.1
Or see this region's nucleotide sequence