Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16925 and HMPREF1058_RS16920 are separated by 420 nucleotides HMPREF1058_RS16920 and HMPREF1058_RS16915 are separated by 110 nucleotides
HMPREF1058_RS16925: HMPREF1058_RS16925 - RagB/SusD family nutrient uptake outer membrane protein, at 559,319 to 561,061
_RS16925
HMPREF1058_RS16920: HMPREF1058_RS16920 - nucleoside triphosphate pyrophosphohydrolase, at 561,482 to 562,267
_RS16920
HMPREF1058_RS16915: HMPREF1058_RS16915 - valine--tRNA ligase, at 562,378 to 565,005
_RS16915
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 560.530 kb on - strand, within HMPREF1058_RS16925 at 560.562 kb on - strand, within HMPREF1058_RS16925 at 560.572 kb on + strand, within HMPREF1058_RS16925 at 560.638 kb on - strand, within HMPREF1058_RS16925 at 560.747 kb on - strand, within HMPREF1058_RS16925 at 560.765 kb on + strand, within HMPREF1058_RS16925 at 560.788 kb on - strand, within HMPREF1058_RS16925 at 560.896 kb on + strand at 560.897 kb on - strand at 560.969 kb on + strand at 560.970 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.977 kb on + strand at 560.996 kb on - strand at 561.059 kb on + strand at 561.059 kb on + strand at 561.155 kb on + strand at 561.156 kb on - strand at 561.156 kb on - strand at 561.214 kb on + strand at 561.229 kb on + strand at 561.229 kb on + strand at 561.231 kb on + strand at 561.232 kb on - strand at 561.254 kb on + strand at 561.254 kb on + strand at 561.254 kb on + strand at 561.255 kb on - strand at 561.255 kb on - strand at 561.255 kb on - strand at 561.256 kb on + strand at 561.257 kb on - strand at 561.259 kb on + strand at 561.270 kb on + strand at 561.329 kb on + strand at 561.338 kb on - strand at 561.338 kb on - strand at 561.346 kb on + strand at 561.347 kb on - strand at 561.349 kb on + strand at 561.350 kb on - strand at 561.393 kb on + strand at 561.398 kb on + strand at 561.399 kb on - strand at 561.414 kb on + strand at 561.449 kb on + strand at 561.449 kb on + strand at 561.461 kb on + strand at 561.514 kb on + strand at 561.538 kb on + strand at 561.579 kb on - strand, within HMPREF1058_RS16920 at 561.665 kb on - strand, within HMPREF1058_RS16920 at 561.677 kb on + strand, within HMPREF1058_RS16920 at 561.678 kb on - strand, within HMPREF1058_RS16920 at 561.678 kb on - strand, within HMPREF1058_RS16920 at 561.755 kb on + strand, within HMPREF1058_RS16920 at 562.135 kb on - strand, within HMPREF1058_RS16920 at 562.151 kb on - strand, within HMPREF1058_RS16920 at 562.215 kb on - strand at 562.261 kb on + strand at 562.276 kb on + strand at 562.279 kb on + strand at 562.310 kb on + strand at 562.310 kb on + strand at 562.674 kb on - strand, within HMPREF1058_RS16915
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 560,530 - HMPREF1058_RS16925 0.69 -0.3 560,562 - HMPREF1058_RS16925 0.71 -0.5 560,572 + HMPREF1058_RS16925 0.72 -1.0 560,638 - HMPREF1058_RS16925 0.76 -1.6 560,747 - HMPREF1058_RS16925 0.82 +0.8 560,765 + HMPREF1058_RS16925 0.83 +0.9 560,788 - HMPREF1058_RS16925 0.84 +1.6 560,896 + -0.9 560,897 - -0.7 560,969 + +0.7 560,970 - -3.1 560,972 - -0.7 560,972 - -0.0 560,977 + -1.5 560,996 - +1.2 561,059 + +0.5 561,059 + +0.3 561,155 + -1.8 561,156 - +0.3 561,156 - +1.4 561,214 + +1.4 561,229 + -0.5 561,229 + -0.7 561,231 + -0.8 561,232 - +0.3 561,254 + -0.2 561,254 + -1.7 561,254 + -0.8 561,255 - +0.9 561,255 - +0.7 561,255 - -0.5 561,256 + -1.0 561,257 - +0.6 561,259 + +0.1 561,270 + +0.2 561,329 + +0.4 561,338 - +0.6 561,338 - -0.2 561,346 + -0.6 561,347 - -1.1 561,349 + -0.8 561,350 - -0.8 561,393 + -1.4 561,398 + -0.0 561,399 - -0.6 561,414 + -0.2 561,449 + -0.8 561,449 + -0.4 561,461 + -0.1 561,514 + -0.8 561,538 + +0.0 561,579 - HMPREF1058_RS16920 0.12 +0.5 561,665 - HMPREF1058_RS16920 0.23 -0.1 561,677 + HMPREF1058_RS16920 0.25 -1.0 561,678 - HMPREF1058_RS16920 0.25 +0.3 561,678 - HMPREF1058_RS16920 0.25 -0.5 561,755 + HMPREF1058_RS16920 0.35 -1.1 562,135 - HMPREF1058_RS16920 0.83 -2.0 562,151 - HMPREF1058_RS16920 0.85 +0.1 562,215 - +1.0 562,261 + -1.6 562,276 + -0.3 562,279 + -0.0 562,310 + -1.3 562,310 + +0.8 562,674 - HMPREF1058_RS16915 0.11 -1.0
Or see this region's nucleotide sequence