Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16725 and HMPREF1058_RS16720 are separated by 12 nucleotides HMPREF1058_RS16720 and HMPREF1058_RS16715 are separated by 89 nucleotides HMPREF1058_RS16715 and HMPREF1058_RS16710 are separated by 205 nucleotides HMPREF1058_RS16710 and HMPREF1058_RS16705 are separated by 356 nucleotides
HMPREF1058_RS16725: HMPREF1058_RS16725 - dipeptidase, at 609,417 to 610,769
_RS16725
HMPREF1058_RS16720: HMPREF1058_RS16720 - nitroreductase family protein, at 610,782 to 611,411
_RS16720
HMPREF1058_RS16715: HMPREF1058_RS16715 - hypothetical protein, at 611,501 to 611,749
_RS16715
HMPREF1058_RS16710: HMPREF1058_RS16710 - hypothetical protein, at 611,955 to 612,278
_RS16710
HMPREF1058_RS16705: HMPREF1058_RS16705 - xanthine phosphoribosyltransferase, at 612,635 to 613,201
_RS16705
Position (kb) 611
612 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.608 kb on - strand, within HMPREF1058_RS16725 at 610.613 kb on + strand, within HMPREF1058_RS16725 at 610.614 kb on - strand, within HMPREF1058_RS16725 at 610.643 kb on + strand at 610.645 kb on + strand at 610.645 kb on + strand at 610.645 kb on + strand at 610.646 kb on - strand at 610.721 kb on - strand at 610.777 kb on + strand at 610.841 kb on - strand at 610.904 kb on - strand, within HMPREF1058_RS16720 at 610.911 kb on - strand, within HMPREF1058_RS16720 at 610.938 kb on + strand, within HMPREF1058_RS16720 at 610.940 kb on + strand, within HMPREF1058_RS16720 at 610.941 kb on - strand, within HMPREF1058_RS16720 at 610.975 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.085 kb on + strand, within HMPREF1058_RS16720 at 611.285 kb on - strand, within HMPREF1058_RS16720 at 611.312 kb on + strand, within HMPREF1058_RS16720 at 611.390 kb on + strand at 611.453 kb on + strand at 611.455 kb on + strand at 611.543 kb on + strand, within HMPREF1058_RS16715 at 611.652 kb on - strand, within HMPREF1058_RS16715 at 611.735 kb on + strand at 611.749 kb on + strand at 611.766 kb on + strand at 611.796 kb on - strand at 611.803 kb on + strand at 611.803 kb on + strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.805 kb on + strand at 611.806 kb on - strand at 611.844 kb on + strand at 611.845 kb on - strand at 611.847 kb on - strand at 611.847 kb on - strand at 611.916 kb on + strand at 611.918 kb on + strand at 611.919 kb on - strand at 611.940 kb on - strand at 611.942 kb on - strand at 611.944 kb on + strand at 611.994 kb on + strand, within HMPREF1058_RS16710 at 612.011 kb on + strand, within HMPREF1058_RS16710 at 612.033 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.042 kb on + strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.048 kb on - strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.192 kb on - strand, within HMPREF1058_RS16710 at 612.267 kb on + strand at 612.344 kb on - strand at 612.365 kb on - strand at 612.391 kb on + strand at 612.423 kb on - strand at 612.442 kb on - strand at 612.452 kb on + strand at 612.452 kb on + strand at 612.458 kb on - strand at 612.514 kb on + strand at 612.569 kb on + strand at 612.626 kb on - strand at 612.699 kb on + strand, within HMPREF1058_RS16705
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 610,513 + HMPREF1058_RS16725 0.81 -0.2 610,513 + HMPREF1058_RS16725 0.81 -1.9 610,513 + HMPREF1058_RS16725 0.81 +0.3 610,513 + HMPREF1058_RS16725 0.81 -0.0 610,513 + HMPREF1058_RS16725 0.81 +0.2 610,514 - HMPREF1058_RS16725 0.81 -1.6 610,514 - HMPREF1058_RS16725 0.81 -0.8 610,514 - HMPREF1058_RS16725 0.81 -2.1 610,608 - HMPREF1058_RS16725 0.88 +0.8 610,613 + HMPREF1058_RS16725 0.88 -1.3 610,614 - HMPREF1058_RS16725 0.88 +3.1 610,643 + +0.6 610,645 + -0.5 610,645 + -1.2 610,645 + +0.5 610,646 - -1.1 610,721 - -1.1 610,777 + +1.1 610,841 - +0.2 610,904 - HMPREF1058_RS16720 0.19 +0.0 610,911 - HMPREF1058_RS16720 0.20 +0.8 610,938 + HMPREF1058_RS16720 0.25 -0.3 610,940 + HMPREF1058_RS16720 0.25 -0.8 610,941 - HMPREF1058_RS16720 0.25 +1.2 610,975 + HMPREF1058_RS16720 0.31 -1.1 611,041 + HMPREF1058_RS16720 0.41 -1.2 611,041 + HMPREF1058_RS16720 0.41 +0.8 611,085 + HMPREF1058_RS16720 0.48 +1.7 611,285 - HMPREF1058_RS16720 0.80 +0.4 611,312 + HMPREF1058_RS16720 0.84 +1.6 611,390 + +0.9 611,453 + +1.2 611,455 + -1.3 611,543 + HMPREF1058_RS16715 0.17 -2.4 611,652 - HMPREF1058_RS16715 0.61 -1.7 611,735 + -1.3 611,749 + -1.2 611,766 + +0.2 611,796 - +0.5 611,803 + +0.1 611,803 + -0.9 611,804 - -0.7 611,804 - -0.8 611,804 - +1.0 611,804 - -0.6 611,805 + +1.1 611,806 - +0.7 611,844 + -0.1 611,845 - -0.5 611,847 - +1.5 611,847 - +2.1 611,916 + +3.0 611,918 + +0.3 611,919 - -1.1 611,940 - -0.4 611,942 - -0.5 611,944 + +0.1 611,994 + HMPREF1058_RS16710 0.12 -1.7 612,011 + HMPREF1058_RS16710 0.17 +0.4 612,033 + HMPREF1058_RS16710 0.24 +0.9 612,037 + HMPREF1058_RS16710 0.25 -0.4 612,037 + HMPREF1058_RS16710 0.25 +0.4 612,037 + HMPREF1058_RS16710 0.25 +0.1 612,038 - HMPREF1058_RS16710 0.26 -0.9 612,038 - HMPREF1058_RS16710 0.26 +2.3 612,038 - HMPREF1058_RS16710 0.26 +1.2 612,038 - HMPREF1058_RS16710 0.26 +2.2 612,039 + HMPREF1058_RS16710 0.26 +0.9 612,039 + HMPREF1058_RS16710 0.26 +1.6 612,040 - HMPREF1058_RS16710 0.26 +0.8 612,040 - HMPREF1058_RS16710 0.26 -0.5 612,040 - HMPREF1058_RS16710 0.26 +0.0 612,040 - HMPREF1058_RS16710 0.26 -0.6 612,042 + HMPREF1058_RS16710 0.27 +0.0 612,043 - HMPREF1058_RS16710 0.27 +0.4 612,043 - HMPREF1058_RS16710 0.27 -1.0 612,047 + HMPREF1058_RS16710 0.28 +2.1 612,047 + HMPREF1058_RS16710 0.28 -0.5 612,048 - HMPREF1058_RS16710 0.29 -1.1 612,159 + HMPREF1058_RS16710 0.63 -0.0 612,159 + HMPREF1058_RS16710 0.63 +0.9 612,192 - HMPREF1058_RS16710 0.73 -1.2 612,267 + -0.2 612,344 - +0.8 612,365 - -0.6 612,391 + +0.8 612,423 - +1.7 612,442 - +1.8 612,452 + -1.6 612,452 + -2.0 612,458 - +1.6 612,514 + +1.4 612,569 + -1.0 612,626 - +1.8 612,699 + HMPREF1058_RS16705 0.11 -0.5
Or see this region's nucleotide sequence