Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16530 and HMPREF1058_RS16525 overlap by 1 nucleotides HMPREF1058_RS16525 and HMPREF1058_RS16520 are separated by 2 nucleotides HMPREF1058_RS16520 and HMPREF1058_RS16515 are separated by 45 nucleotides
HMPREF1058_RS16530: HMPREF1058_RS16530 - Rossmann-like and DUF2520 domain-containing protein, at 651,132 to 651,938
_RS16530
HMPREF1058_RS16525: HMPREF1058_RS16525 - hypothetical protein, at 651,938 to 652,264
_RS16525
HMPREF1058_RS16520: HMPREF1058_RS16520 - nitroreductase family protein, at 652,267 to 652,803
_RS16520
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
Position (kb) 652
653 Strain fitness (log2 ratio) -2
-1
0
1
2 at 651.400 kb on - strand, within HMPREF1058_RS16530 at 651.407 kb on - strand, within HMPREF1058_RS16530 at 651.567 kb on - strand, within HMPREF1058_RS16530 at 651.606 kb on - strand, within HMPREF1058_RS16530 at 651.646 kb on - strand, within HMPREF1058_RS16530 at 651.660 kb on - strand, within HMPREF1058_RS16530 at 651.672 kb on - strand, within HMPREF1058_RS16530 at 651.748 kb on - strand, within HMPREF1058_RS16530 at 651.753 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.775 kb on - strand, within HMPREF1058_RS16530 at 651.853 kb on - strand, within HMPREF1058_RS16530 at 652.026 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.120 kb on - strand, within HMPREF1058_RS16525 at 652.236 kb on + strand at 652.237 kb on - strand at 652.237 kb on - strand at 652.241 kb on - strand at 652.363 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand at 652.571 kb on - strand, within HMPREF1058_RS16520 at 652.579 kb on - strand, within HMPREF1058_RS16520 at 652.678 kb on - strand, within HMPREF1058_RS16520 at 652.724 kb on - strand, within HMPREF1058_RS16520 at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.840 kb on - strand at 652.846 kb on - strand at 652.886 kb on + strand at 652.965 kb on + strand, within HMPREF1058_RS16515 at 653.031 kb on - strand, within HMPREF1058_RS16515 at 653.155 kb on - strand, within HMPREF1058_RS16515 at 653.281 kb on + strand, within HMPREF1058_RS16515 at 653.307 kb on - strand, within HMPREF1058_RS16515 at 653.511 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 651,400 - HMPREF1058_RS16530 0.33 -0.9 651,407 - HMPREF1058_RS16530 0.34 +1.1 651,567 - HMPREF1058_RS16530 0.54 -2.0 651,606 - HMPREF1058_RS16530 0.59 +1.1 651,646 - HMPREF1058_RS16530 0.64 -0.2 651,660 - HMPREF1058_RS16530 0.65 -0.0 651,672 - HMPREF1058_RS16530 0.67 +1.2 651,748 - HMPREF1058_RS16530 0.76 -0.4 651,753 - HMPREF1058_RS16530 0.77 +1.2 651,755 - HMPREF1058_RS16530 0.77 +0.2 651,755 - HMPREF1058_RS16530 0.77 -0.4 651,775 - HMPREF1058_RS16530 0.80 -0.3 651,853 - HMPREF1058_RS16530 0.89 -1.5 652,026 - HMPREF1058_RS16525 0.27 +0.9 652,056 - HMPREF1058_RS16525 0.36 -0.7 652,056 - HMPREF1058_RS16525 0.36 -0.6 652,120 - HMPREF1058_RS16525 0.56 -0.6 652,236 + +1.6 652,237 - -1.4 652,237 - -2.7 652,241 - -0.1 652,363 - HMPREF1058_RS16520 0.18 +0.3 652,405 - HMPREF1058_RS16520 0.26 +0.4 652,405 - +1.8 652,571 - HMPREF1058_RS16520 0.57 +0.2 652,579 - HMPREF1058_RS16520 0.58 -2.5 652,678 - HMPREF1058_RS16520 0.77 -0.5 652,724 - HMPREF1058_RS16520 0.85 -0.1 652,807 - -0.5 652,807 - -1.1 652,807 - -1.7 652,807 - -0.0 652,840 - +0.5 652,846 - -0.9 652,886 + +1.4 652,965 + HMPREF1058_RS16515 0.11 -2.4 653,031 - HMPREF1058_RS16515 0.18 -1.8 653,155 - HMPREF1058_RS16515 0.30 -0.3 653,281 + HMPREF1058_RS16515 0.42 -0.2 653,307 - HMPREF1058_RS16515 0.45 +0.9 653,511 - HMPREF1058_RS16515 0.65 -0.8 653,587 - HMPREF1058_RS16515 0.72 +0.3 653,587 - HMPREF1058_RS16515 0.72 -1.0 653,614 + HMPREF1058_RS16515 0.75 +0.5 653,634 + HMPREF1058_RS16515 0.77 -0.4 653,647 + HMPREF1058_RS16515 0.78 +1.1 653,688 + HMPREF1058_RS16515 0.82 +0.2 653,689 - HMPREF1058_RS16515 0.82 +0.5 653,696 - HMPREF1058_RS16515 0.83 -0.2 653,696 - HMPREF1058_RS16515 0.83 -0.3 653,775 + -0.5 653,776 - -0.6 653,776 - +0.5 653,776 - +1.1
Or see this region's nucleotide sequence