Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16440 and HMPREF1058_RS16435 are separated by 79 nucleotides HMPREF1058_RS16435 and HMPREF1058_RS16430 are separated by 103 nucleotides
HMPREF1058_RS16440: HMPREF1058_RS16440 - endonuclease MutS2, at 667,483 to 669,987
_RS16440
HMPREF1058_RS16435: HMPREF1058_RS16435 - RNA polymerase sigma-70 factor, at 670,067 to 670,618
_RS16435
HMPREF1058_RS16430: HMPREF1058_RS16430 - FecR domain-containing protein, at 670,722 to 671,891
_RS16430
Position (kb) 670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 669.070 kb on + strand, within HMPREF1058_RS16440 at 669.527 kb on + strand, within HMPREF1058_RS16440 at 669.600 kb on - strand, within HMPREF1058_RS16440 at 669.603 kb on + strand, within HMPREF1058_RS16440 at 669.725 kb on + strand, within HMPREF1058_RS16440 at 669.806 kb on - strand at 669.837 kb on - strand at 670.103 kb on - strand at 670.143 kb on - strand, within HMPREF1058_RS16435 at 670.146 kb on - strand, within HMPREF1058_RS16435 at 670.149 kb on + strand, within HMPREF1058_RS16435 at 670.150 kb on - strand, within HMPREF1058_RS16435 at 670.281 kb on + strand, within HMPREF1058_RS16435 at 670.281 kb on + strand, within HMPREF1058_RS16435 at 670.283 kb on + strand, within HMPREF1058_RS16435 at 670.337 kb on + strand, within HMPREF1058_RS16435 at 670.473 kb on + strand, within HMPREF1058_RS16435 at 670.474 kb on - strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.521 kb on + strand, within HMPREF1058_RS16435 at 670.522 kb on - strand, within HMPREF1058_RS16435 at 670.522 kb on - strand, within HMPREF1058_RS16435 at 670.522 kb on - strand, within HMPREF1058_RS16435 at 670.525 kb on + strand, within HMPREF1058_RS16435 at 670.525 kb on + strand, within HMPREF1058_RS16435 at 670.612 kb on + strand at 670.613 kb on - strand at 670.628 kb on - strand at 670.695 kb on + strand at 670.696 kb on - strand at 670.740 kb on + strand at 670.740 kb on + strand at 670.741 kb on - strand at 670.756 kb on + strand at 670.781 kb on - strand at 670.971 kb on - strand, within HMPREF1058_RS16430 at 670.982 kb on - strand, within HMPREF1058_RS16430 at 670.982 kb on - strand, within HMPREF1058_RS16430 at 670.986 kb on + strand, within HMPREF1058_RS16430 at 671.006 kb on - strand, within HMPREF1058_RS16430 at 671.141 kb on + strand, within HMPREF1058_RS16430 at 671.144 kb on - strand, within HMPREF1058_RS16430 at 671.177 kb on - strand, within HMPREF1058_RS16430 at 671.204 kb on + strand, within HMPREF1058_RS16430 at 671.205 kb on - strand, within HMPREF1058_RS16430 at 671.224 kb on + strand, within HMPREF1058_RS16430 at 671.224 kb on + strand, within HMPREF1058_RS16430 at 671.257 kb on + strand, within HMPREF1058_RS16430 at 671.262 kb on - strand, within HMPREF1058_RS16430 at 671.265 kb on - strand, within HMPREF1058_RS16430 at 671.292 kb on + strand, within HMPREF1058_RS16430 at 671.293 kb on - strand, within HMPREF1058_RS16430 at 671.299 kb on + strand, within HMPREF1058_RS16430 at 671.299 kb on + strand, within HMPREF1058_RS16430 at 671.300 kb on - strand, within HMPREF1058_RS16430 at 671.300 kb on - strand, within HMPREF1058_RS16430 at 671.305 kb on + strand, within HMPREF1058_RS16430 at 671.406 kb on + strand, within HMPREF1058_RS16430 at 671.439 kb on - strand, within HMPREF1058_RS16430 at 671.439 kb on - strand, within HMPREF1058_RS16430 at 671.440 kb on + strand, within HMPREF1058_RS16430 at 671.440 kb on + strand, within HMPREF1058_RS16430 at 671.441 kb on - strand, within HMPREF1058_RS16430 at 671.442 kb on - strand, within HMPREF1058_RS16430
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 669,070 + HMPREF1058_RS16440 0.63 +0.6 669,527 + HMPREF1058_RS16440 0.82 -0.7 669,600 - HMPREF1058_RS16440 0.85 +1.9 669,603 + HMPREF1058_RS16440 0.85 +0.3 669,725 + HMPREF1058_RS16440 0.90 +0.8 669,806 - -0.1 669,837 - +2.8 670,103 - -0.4 670,143 - HMPREF1058_RS16435 0.14 -0.5 670,146 - HMPREF1058_RS16435 0.14 -0.1 670,149 + HMPREF1058_RS16435 0.15 -0.5 670,150 - HMPREF1058_RS16435 0.15 -0.6 670,281 + HMPREF1058_RS16435 0.39 +0.6 670,281 + HMPREF1058_RS16435 0.39 +1.4 670,283 + HMPREF1058_RS16435 0.39 -0.9 670,337 + HMPREF1058_RS16435 0.49 -0.9 670,473 + HMPREF1058_RS16435 0.74 +1.2 670,474 - HMPREF1058_RS16435 0.74 -1.6 670,521 + HMPREF1058_RS16435 0.82 -0.8 670,521 + HMPREF1058_RS16435 0.82 -0.5 670,521 + HMPREF1058_RS16435 0.82 -0.1 670,521 + HMPREF1058_RS16435 0.82 -1.6 670,522 - HMPREF1058_RS16435 0.82 -0.4 670,522 - HMPREF1058_RS16435 0.82 -0.8 670,522 - HMPREF1058_RS16435 0.82 +1.4 670,525 + HMPREF1058_RS16435 0.83 +0.4 670,525 + HMPREF1058_RS16435 0.83 -1.0 670,612 + +1.1 670,613 - +0.1 670,628 - +1.5 670,695 + +0.2 670,696 - -2.3 670,740 + +0.1 670,740 + +0.9 670,741 - -1.7 670,756 + +1.3 670,781 - +0.6 670,971 - HMPREF1058_RS16430 0.21 +0.7 670,982 - HMPREF1058_RS16430 0.22 -0.7 670,982 - HMPREF1058_RS16430 0.22 +0.5 670,986 + HMPREF1058_RS16430 0.23 -0.9 671,006 - HMPREF1058_RS16430 0.24 +2.4 671,141 + HMPREF1058_RS16430 0.36 -1.2 671,144 - HMPREF1058_RS16430 0.36 -0.7 671,177 - HMPREF1058_RS16430 0.39 -0.6 671,204 + HMPREF1058_RS16430 0.41 -0.5 671,205 - HMPREF1058_RS16430 0.41 +0.7 671,224 + HMPREF1058_RS16430 0.43 +1.2 671,224 + HMPREF1058_RS16430 0.43 +0.6 671,257 + HMPREF1058_RS16430 0.46 +1.8 671,262 - HMPREF1058_RS16430 0.46 -0.5 671,265 - HMPREF1058_RS16430 0.46 -2.1 671,292 + HMPREF1058_RS16430 0.49 -0.4 671,293 - HMPREF1058_RS16430 0.49 -3.0 671,299 + HMPREF1058_RS16430 0.49 +1.2 671,299 + HMPREF1058_RS16430 0.49 -1.5 671,300 - HMPREF1058_RS16430 0.49 +1.1 671,300 - HMPREF1058_RS16430 0.49 -0.1 671,305 + HMPREF1058_RS16430 0.50 -0.5 671,406 + HMPREF1058_RS16430 0.58 +1.8 671,439 - HMPREF1058_RS16430 0.61 -1.8 671,439 - HMPREF1058_RS16430 0.61 -0.4 671,440 + HMPREF1058_RS16430 0.61 +1.1 671,440 + HMPREF1058_RS16430 0.61 +0.1 671,441 - HMPREF1058_RS16430 0.61 -2.1 671,442 - HMPREF1058_RS16430 0.62 -0.9
Or see this region's nucleotide sequence