Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16270

Experiment: Lacto-N-tetraose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16275 and HMPREF1058_RS16270 are separated by 236 nucleotidesHMPREF1058_RS16270 and HMPREF1058_RS16265 overlap by 38 nucleotides HMPREF1058_RS16275: HMPREF1058_RS16275 - FAD-dependent oxidoreductase, at 714,824 to 717,325 _RS16275 HMPREF1058_RS16270: HMPREF1058_RS16270 - MATE family efflux transporter, at 717,562 to 718,917 _RS16270 HMPREF1058_RS16265: HMPREF1058_RS16265 - SLC13 family permease, at 718,880 to 720,742 _RS16265 Position (kb) 717 718 719Strain fitness (log2 ratio) -2 -1 0 1 2at 716.584 kb on + strand, within HMPREF1058_RS16275at 716.585 kb on - strand, within HMPREF1058_RS16275at 716.765 kb on - strand, within HMPREF1058_RS16275at 716.883 kb on + strand, within HMPREF1058_RS16275at 716.884 kb on + strand, within HMPREF1058_RS16275at 716.898 kb on + strand, within HMPREF1058_RS16275at 716.899 kb on - strand, within HMPREF1058_RS16275at 716.929 kb on + strand, within HMPREF1058_RS16275at 716.929 kb on + strand, within HMPREF1058_RS16275at 717.064 kb on + strand, within HMPREF1058_RS16275at 717.084 kb on - strandat 717.086 kb on + strandat 717.147 kb on - strandat 717.184 kb on + strandat 717.185 kb on - strandat 717.186 kb on + strandat 717.187 kb on - strandat 717.190 kb on - strandat 717.218 kb on + strandat 717.219 kb on + strandat 717.220 kb on - strandat 717.309 kb on - strandat 717.314 kb on + strandat 717.314 kb on + strandat 717.314 kb on + strandat 717.314 kb on + strandat 717.318 kb on + strandat 717.319 kb on - strandat 717.326 kb on - strandat 717.380 kb on + strandat 717.467 kb on - strandat 717.467 kb on - strandat 717.507 kb on - strandat 717.619 kb on - strandat 717.623 kb on + strandat 717.636 kb on - strandat 717.647 kb on + strandat 717.658 kb on + strandat 717.837 kb on + strand, within HMPREF1058_RS16270at 717.844 kb on + strand, within HMPREF1058_RS16270at 717.844 kb on + strand, within HMPREF1058_RS16270at 717.884 kb on + strand, within HMPREF1058_RS16270at 717.889 kb on - strand, within HMPREF1058_RS16270at 717.961 kb on + strand, within HMPREF1058_RS16270at 718.006 kb on - strand, within HMPREF1058_RS16270at 718.086 kb on - strand, within HMPREF1058_RS16270at 718.204 kb on + strand, within HMPREF1058_RS16270at 718.337 kb on + strand, within HMPREF1058_RS16270at 718.367 kb on + strand, within HMPREF1058_RS16270at 718.394 kb on + strand, within HMPREF1058_RS16270at 718.395 kb on - strand, within HMPREF1058_RS16270at 718.630 kb on - strand, within HMPREF1058_RS16270at 718.824 kb on + strandat 718.825 kb on - strandat 718.865 kb on + strandat 718.865 kb on + strandat 718.865 kb on + strandat 718.867 kb on + strandat 718.871 kb on - strandat 718.904 kb on + strandat 718.955 kb on + strandat 718.956 kb on - strandat 718.959 kb on + strandat 718.972 kb on + strandat 718.972 kb on + strandat 718.973 kb on - strandat 718.974 kb on + strandat 718.975 kb on - strandat 718.975 kb on - strandat 718.975 kb on - strandat 718.975 kb on - strandat 719.035 kb on + strandat 719.078 kb on + strand, within HMPREF1058_RS16265at 719.079 kb on - strand, within HMPREF1058_RS16265at 719.168 kb on - strand, within HMPREF1058_RS16265at 719.168 kb on - strand, within HMPREF1058_RS16265at 719.179 kb on + strand, within HMPREF1058_RS16265at 719.206 kb on - strand, within HMPREF1058_RS16265at 719.317 kb on + strand, within HMPREF1058_RS16265at 719.631 kb on + strand, within HMPREF1058_RS16265at 719.632 kb on - strand, within HMPREF1058_RS16265at 719.658 kb on - strand, within HMPREF1058_RS16265at 719.750 kb on + strand, within HMPREF1058_RS16265at 719.750 kb on + strand, within HMPREF1058_RS16265at 719.750 kb on + strand, within HMPREF1058_RS16265at 719.750 kb on + strand, within HMPREF1058_RS16265at 719.751 kb on - strand, within HMPREF1058_RS16265at 719.751 kb on - strand, within HMPREF1058_RS16265at 719.751 kb on - strand, within HMPREF1058_RS16265at 719.751 kb on - strand, within HMPREF1058_RS16265at 719.751 kb on - strand, within HMPREF1058_RS16265at 719.826 kb on + strand, within HMPREF1058_RS16265at 719.879 kb on - strand, within HMPREF1058_RS16265

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Per-strain Table

Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C)
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716,584 + HMPREF1058_RS16275 0.70 +0.5
716,585 - HMPREF1058_RS16275 0.70 -1.0
716,765 - HMPREF1058_RS16275 0.78 -0.6
716,883 + HMPREF1058_RS16275 0.82 -0.4
716,884 + HMPREF1058_RS16275 0.82 -0.4
716,898 + HMPREF1058_RS16275 0.83 -0.2
716,899 - HMPREF1058_RS16275 0.83 -2.2
716,929 + HMPREF1058_RS16275 0.84 +1.3
716,929 + HMPREF1058_RS16275 0.84 -0.3
717,064 + HMPREF1058_RS16275 0.90 +1.6
717,084 - +0.3
717,086 + +0.2
717,147 - +0.4
717,184 + -0.5
717,185 - +0.7
717,186 + -1.0
717,187 - -0.3
717,190 - -0.9
717,218 + +0.1
717,219 + +1.5
717,220 - +0.2
717,309 - +0.3
717,314 + +0.7
717,314 + +0.2
717,314 + +0.2
717,314 + +1.6
717,318 + -1.2
717,319 - -0.7
717,326 - +0.3
717,380 + -0.0
717,467 - +1.0
717,467 - -1.1
717,507 - +0.3
717,619 - +0.1
717,623 + +2.3
717,636 - +0.1
717,647 + +0.1
717,658 + -0.7
717,837 + HMPREF1058_RS16270 0.20 -1.0
717,844 + HMPREF1058_RS16270 0.21 +0.2
717,844 + HMPREF1058_RS16270 0.21 -0.6
717,884 + HMPREF1058_RS16270 0.24 -1.7
717,889 - HMPREF1058_RS16270 0.24 +1.2
717,961 + HMPREF1058_RS16270 0.29 -0.6
718,006 - HMPREF1058_RS16270 0.33 -1.3
718,086 - HMPREF1058_RS16270 0.39 +0.1
718,204 + HMPREF1058_RS16270 0.47 -1.2
718,337 + HMPREF1058_RS16270 0.57 -1.3
718,367 + HMPREF1058_RS16270 0.59 +1.8
718,394 + HMPREF1058_RS16270 0.61 -0.2
718,395 - HMPREF1058_RS16270 0.61 -0.9
718,630 - HMPREF1058_RS16270 0.79 -0.9
718,824 + -1.2
718,825 - -1.2
718,865 + -0.3
718,865 + +0.7
718,865 + +1.1
718,867 + -0.2
718,871 - +0.2
718,904 + +0.5
718,955 + -2.4
718,956 - -0.9
718,959 + -0.4
718,972 + -0.6
718,972 + -2.4
718,973 - -1.3
718,974 + -1.3
718,975 - -0.6
718,975 - +0.8
718,975 - +0.9
718,975 - -0.9
719,035 + -1.5
719,078 + HMPREF1058_RS16265 0.11 +0.0
719,079 - HMPREF1058_RS16265 0.11 -0.9
719,168 - HMPREF1058_RS16265 0.15 -0.4
719,168 - HMPREF1058_RS16265 0.15 -0.9
719,179 + HMPREF1058_RS16265 0.16 -0.5
719,206 - HMPREF1058_RS16265 0.17 -1.7
719,317 + HMPREF1058_RS16265 0.23 +0.1
719,631 + HMPREF1058_RS16265 0.40 -0.2
719,632 - HMPREF1058_RS16265 0.40 -0.9
719,658 - HMPREF1058_RS16265 0.42 +0.0
719,750 + HMPREF1058_RS16265 0.47 -1.2
719,750 + HMPREF1058_RS16265 0.47 +0.6
719,750 + HMPREF1058_RS16265 0.47 -0.7
719,750 + HMPREF1058_RS16265 0.47 -1.7
719,751 - HMPREF1058_RS16265 0.47 +0.0
719,751 - HMPREF1058_RS16265 0.47 -1.0
719,751 - HMPREF1058_RS16265 0.47 -0.7
719,751 - HMPREF1058_RS16265 0.47 -0.0
719,751 - HMPREF1058_RS16265 0.47 -2.2
719,826 + HMPREF1058_RS16265 0.51 -0.4
719,879 - HMPREF1058_RS16265 0.54 +0.2

Or see this region's nucleotide sequence