Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16065 and HMPREF1058_RS16060 are separated by 287 nucleotides HMPREF1058_RS16060 and HMPREF1058_RS16055 are separated by 21 nucleotides
HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639
_RS16065
HMPREF1058_RS16060: HMPREF1058_RS16060 - 5S ribosomal RNA, at 768,927 to 769,035
_RS16060
HMPREF1058_RS16055: HMPREF1058_RS16055 - AAA family ATPase, at 769,057 to 770,673
_RS16055
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 767.931 kb on - strand, within HMPREF1058_RS16065 at 768.048 kb on + strand, within HMPREF1058_RS16065 at 768.188 kb on - strand, within HMPREF1058_RS16065 at 768.231 kb on - strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.425 kb on + strand, within HMPREF1058_RS16065 at 768.465 kb on + strand, within HMPREF1058_RS16065 at 768.515 kb on + strand, within HMPREF1058_RS16065 at 768.555 kb on + strand at 768.576 kb on - strand at 768.635 kb on - strand at 768.691 kb on - strand at 768.725 kb on + strand at 768.755 kb on + strand at 768.941 kb on + strand, within HMPREF1058_RS16060 at 768.942 kb on - strand, within HMPREF1058_RS16060 at 768.942 kb on - strand, within HMPREF1058_RS16060 at 769.003 kb on - strand, within HMPREF1058_RS16060 at 769.025 kb on + strand at 769.025 kb on + strand at 769.025 kb on + strand at 769.033 kb on + strand at 769.040 kb on - strand at 769.180 kb on - strand at 769.194 kb on + strand at 769.195 kb on - strand at 769.198 kb on + strand at 769.204 kb on + strand at 769.204 kb on + strand at 769.258 kb on + strand, within HMPREF1058_RS16055 at 769.266 kb on + strand, within HMPREF1058_RS16055 at 769.267 kb on - strand, within HMPREF1058_RS16055 at 769.351 kb on - strand, within HMPREF1058_RS16055 at 769.351 kb on - strand, within HMPREF1058_RS16055 at 769.475 kb on - strand, within HMPREF1058_RS16055 at 769.527 kb on + strand, within HMPREF1058_RS16055 at 769.528 kb on - strand, within HMPREF1058_RS16055 at 769.549 kb on + strand, within HMPREF1058_RS16055 at 769.636 kb on + strand at 769.657 kb on + strand, within HMPREF1058_RS16055 at 769.717 kb on + strand, within HMPREF1058_RS16055 at 769.718 kb on - strand, within HMPREF1058_RS16055 at 769.898 kb on + strand, within HMPREF1058_RS16055 at 769.898 kb on + strand, within HMPREF1058_RS16055 at 769.979 kb on + strand, within HMPREF1058_RS16055 at 770.031 kb on + strand, within HMPREF1058_RS16055 at 770.032 kb on - strand, within HMPREF1058_RS16055 at 770.032 kb on - strand, within HMPREF1058_RS16055
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 767,931 - HMPREF1058_RS16065 0.33 -2.1 768,048 + HMPREF1058_RS16065 0.44 +0.5 768,188 - HMPREF1058_RS16065 0.57 -1.3 768,231 - HMPREF1058_RS16065 0.61 +0.3 768,336 + HMPREF1058_RS16065 0.71 +0.1 768,336 + HMPREF1058_RS16065 0.71 -0.4 768,425 + HMPREF1058_RS16065 0.80 +0.4 768,465 + HMPREF1058_RS16065 0.83 +0.3 768,515 + HMPREF1058_RS16065 0.88 -1.0 768,555 + +0.3 768,576 - -0.1 768,635 - +0.2 768,691 - -0.2 768,725 + +4.4 768,755 + +0.1 768,941 + HMPREF1058_RS16060 0.13 -2.5 768,942 - HMPREF1058_RS16060 0.14 -0.8 768,942 - HMPREF1058_RS16060 0.14 -0.9 769,003 - HMPREF1058_RS16060 0.70 +0.8 769,025 + +4.4 769,025 + -0.2 769,025 + -0.2 769,033 + -2.0 769,040 - -0.1 769,180 - -0.1 769,194 + -1.2 769,195 - +0.6 769,198 + -0.4 769,204 + -1.6 769,204 + -2.2 769,258 + HMPREF1058_RS16055 0.12 -0.3 769,266 + HMPREF1058_RS16055 0.13 -0.4 769,267 - HMPREF1058_RS16055 0.13 -1.1 769,351 - HMPREF1058_RS16055 0.18 +0.1 769,351 - HMPREF1058_RS16055 0.18 -0.2 769,475 - HMPREF1058_RS16055 0.26 +0.2 769,527 + HMPREF1058_RS16055 0.29 +0.1 769,528 - HMPREF1058_RS16055 0.29 -0.8 769,549 + HMPREF1058_RS16055 0.30 -0.3 769,636 + +1.0 769,657 + HMPREF1058_RS16055 0.37 -0.8 769,717 + HMPREF1058_RS16055 0.41 -0.8 769,718 - HMPREF1058_RS16055 0.41 +0.2 769,898 + HMPREF1058_RS16055 0.52 -0.7 769,898 + HMPREF1058_RS16055 0.52 +1.2 769,979 + HMPREF1058_RS16055 0.57 +4.4 770,031 + HMPREF1058_RS16055 0.60 +0.8 770,032 - HMPREF1058_RS16055 0.60 -1.0 770,032 - HMPREF1058_RS16055 0.60 -0.2
Or see this region's nucleotide sequence