Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15975 and HMPREF1058_RS15970 are separated by 67 nucleotides HMPREF1058_RS15970 and HMPREF1058_RS15965 are separated by 12 nucleotides HMPREF1058_RS15965 and HMPREF1058_RS15960 are separated by 74 nucleotides HMPREF1058_RS15960 and HMPREF1058_RS15955 are separated by 205 nucleotides
HMPREF1058_RS15975: HMPREF1058_RS15975 - saccharopine dehydrogenase family protein, at 793,011 to 794,204
_RS15975
HMPREF1058_RS15970: HMPREF1058_RS15970 - thioredoxin-dependent thiol peroxidase, at 794,272 to 794,718
_RS15970
HMPREF1058_RS15965: HMPREF1058_RS15965 - recombinase RecA, at 794,731 to 795,774
_RS15965
HMPREF1058_RS15960: HMPREF1058_RS15960 - DUF4923 family protein, at 795,849 to 796,445
_RS15960
HMPREF1058_RS15955: HMPREF1058_RS15955 - RagB/SusD family nutrient uptake outer membrane protein, at 796,651 to 798,366
_RS15955
Position (kb) 794
795
796 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 793.922 kb on + strand, within HMPREF1058_RS15975 at 793.964 kb on + strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.969 kb on - strand, within HMPREF1058_RS15975 at 793.972 kb on - strand, within HMPREF1058_RS15975 at 793.978 kb on - strand, within HMPREF1058_RS15975 at 794.030 kb on - strand, within HMPREF1058_RS15975 at 794.034 kb on + strand, within HMPREF1058_RS15975 at 794.036 kb on + strand, within HMPREF1058_RS15975 at 794.037 kb on - strand, within HMPREF1058_RS15975 at 794.113 kb on + strand at 794.179 kb on + strand at 794.224 kb on + strand at 794.224 kb on + strand at 794.280 kb on - strand at 794.360 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.363 kb on + strand, within HMPREF1058_RS15970 at 794.427 kb on + strand, within HMPREF1058_RS15970 at 794.522 kb on + strand, within HMPREF1058_RS15970 at 794.596 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.608 kb on + strand, within HMPREF1058_RS15970 at 794.609 kb on - strand, within HMPREF1058_RS15970 at 794.626 kb on - strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.664 kb on + strand, within HMPREF1058_RS15970 at 794.665 kb on - strand, within HMPREF1058_RS15970 at 794.964 kb on - strand, within HMPREF1058_RS15965 at 795.115 kb on - strand, within HMPREF1058_RS15965 at 795.119 kb on + strand, within HMPREF1058_RS15965 at 795.252 kb on + strand, within HMPREF1058_RS15965 at 795.312 kb on + strand, within HMPREF1058_RS15965 at 795.312 kb on + strand, within HMPREF1058_RS15965 at 795.345 kb on + strand, within HMPREF1058_RS15965 at 795.609 kb on - strand, within HMPREF1058_RS15965 at 795.620 kb on + strand, within HMPREF1058_RS15965 at 795.650 kb on - strand, within HMPREF1058_RS15965 at 795.822 kb on + strand at 795.825 kb on + strand at 795.832 kb on + strand at 795.839 kb on + strand at 795.844 kb on + strand at 795.886 kb on + strand at 795.902 kb on + strand at 795.903 kb on - strand at 796.035 kb on + strand, within HMPREF1058_RS15960 at 796.055 kb on + strand, within HMPREF1058_RS15960 at 796.087 kb on + strand, within HMPREF1058_RS15960 at 796.088 kb on - strand, within HMPREF1058_RS15960 at 796.120 kb on + strand, within HMPREF1058_RS15960 at 796.121 kb on - strand, within HMPREF1058_RS15960 at 796.148 kb on + strand, within HMPREF1058_RS15960 at 796.149 kb on - strand, within HMPREF1058_RS15960 at 796.150 kb on + strand at 796.276 kb on - strand, within HMPREF1058_RS15960 at 796.276 kb on - strand, within HMPREF1058_RS15960 at 796.279 kb on + strand, within HMPREF1058_RS15960 at 796.289 kb on + strand, within HMPREF1058_RS15960 at 796.294 kb on - strand, within HMPREF1058_RS15960 at 796.294 kb on - strand, within HMPREF1058_RS15960 at 796.298 kb on + strand, within HMPREF1058_RS15960 at 796.356 kb on - strand, within HMPREF1058_RS15960 at 796.412 kb on + strand at 796.451 kb on - strand at 796.505 kb on - strand at 796.505 kb on - strand at 796.526 kb on + strand at 796.599 kb on + strand at 796.599 kb on + strand at 796.600 kb on - strand at 796.603 kb on + strand at 796.648 kb on - strand at 796.650 kb on - strand at 796.699 kb on - strand at 796.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 793,922 + HMPREF1058_RS15975 0.76 +1.4 793,964 + HMPREF1058_RS15975 0.80 -2.4 793,969 - HMPREF1058_RS15975 0.80 +0.5 793,969 - HMPREF1058_RS15975 0.80 +0.5 793,969 - HMPREF1058_RS15975 0.80 +0.9 793,969 - HMPREF1058_RS15975 0.80 +1.0 793,972 - HMPREF1058_RS15975 0.80 -0.4 793,978 - HMPREF1058_RS15975 0.81 +2.8 794,030 - HMPREF1058_RS15975 0.85 +1.7 794,034 + HMPREF1058_RS15975 0.86 -1.0 794,036 + HMPREF1058_RS15975 0.86 +0.0 794,037 - HMPREF1058_RS15975 0.86 +1.4 794,113 + +1.1 794,179 + -1.8 794,224 + -0.5 794,224 + -1.8 794,280 - +0.1 794,360 + HMPREF1058_RS15970 0.20 -0.8 794,363 + HMPREF1058_RS15970 0.20 +1.4 794,363 + HMPREF1058_RS15970 0.20 -0.0 794,427 + HMPREF1058_RS15970 0.35 +0.5 794,522 + HMPREF1058_RS15970 0.56 +0.2 794,596 + HMPREF1058_RS15970 0.72 -1.0 794,608 + HMPREF1058_RS15970 0.75 +0.1 794,608 + HMPREF1058_RS15970 0.75 +1.4 794,609 - HMPREF1058_RS15970 0.75 +1.1 794,626 - HMPREF1058_RS15970 0.79 +0.2 794,664 + HMPREF1058_RS15970 0.88 -1.2 794,664 + HMPREF1058_RS15970 0.88 +1.1 794,665 - HMPREF1058_RS15970 0.88 +0.7 794,964 - HMPREF1058_RS15965 0.22 -0.4 795,115 - HMPREF1058_RS15965 0.37 +0.8 795,119 + HMPREF1058_RS15965 0.37 +0.2 795,252 + HMPREF1058_RS15965 0.50 -1.6 795,312 + HMPREF1058_RS15965 0.56 -2.7 795,312 + HMPREF1058_RS15965 0.56 -0.8 795,345 + HMPREF1058_RS15965 0.59 +1.3 795,609 - HMPREF1058_RS15965 0.84 -0.5 795,620 + HMPREF1058_RS15965 0.85 -1.4 795,650 - HMPREF1058_RS15965 0.88 +0.2 795,822 + -1.2 795,825 + -0.1 795,832 + +1.7 795,839 + +2.8 795,844 + -1.9 795,886 + -1.4 795,902 + -0.4 795,903 - +0.9 796,035 + HMPREF1058_RS15960 0.31 -0.0 796,055 + HMPREF1058_RS15960 0.35 -0.4 796,087 + HMPREF1058_RS15960 0.40 -1.4 796,088 - HMPREF1058_RS15960 0.40 -0.6 796,120 + HMPREF1058_RS15960 0.45 +0.7 796,121 - HMPREF1058_RS15960 0.46 -0.2 796,148 + HMPREF1058_RS15960 0.50 +0.7 796,149 - HMPREF1058_RS15960 0.50 -0.7 796,150 + +2.8 796,276 - HMPREF1058_RS15960 0.72 -0.6 796,276 - HMPREF1058_RS15960 0.72 -1.0 796,279 + HMPREF1058_RS15960 0.72 +1.5 796,289 + HMPREF1058_RS15960 0.74 -0.6 796,294 - HMPREF1058_RS15960 0.75 +0.1 796,294 - HMPREF1058_RS15960 0.75 +0.9 796,298 + HMPREF1058_RS15960 0.75 -1.3 796,356 - HMPREF1058_RS15960 0.85 -0.1 796,412 + -2.4 796,451 - +0.3 796,505 - +3.4 796,505 - -0.8 796,526 + -0.3 796,599 + +0.7 796,599 + -0.1 796,600 - -0.8 796,603 + -1.8 796,648 - +0.2 796,650 - -0.4 796,699 - -2.4 796,736 - +2.4
Or see this region's nucleotide sequence