Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15925 and HMPREF1058_RS15920 are separated by 221 nucleotides HMPREF1058_RS15920 and HMPREF1058_RS15915 are separated by 22 nucleotides HMPREF1058_RS15915 and HMPREF1058_RS15910 are separated by 118 nucleotides
HMPREF1058_RS15925: HMPREF1058_RS15925 - aminoacyl-histidine dipeptidase, at 807,083 to 808,540
_RS15925
HMPREF1058_RS15920: HMPREF1058_RS15920 - hypothetical protein, at 808,762 to 808,989
_RS15920
HMPREF1058_RS15915: HMPREF1058_RS15915 - OmpH family outer membrane protein, at 809,012 to 809,626
_RS15915
HMPREF1058_RS15910: HMPREF1058_RS15910 - thioredoxin, at 809,745 to 810,041
_RS15910
Position (kb) 808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 807.779 kb on - strand at 807.818 kb on - strand, within HMPREF1058_RS15925 at 807.820 kb on - strand, within HMPREF1058_RS15925 at 807.820 kb on - strand, within HMPREF1058_RS15925 at 807.823 kb on + strand, within HMPREF1058_RS15925 at 807.881 kb on - strand, within HMPREF1058_RS15925 at 807.886 kb on + strand, within HMPREF1058_RS15925 at 807.970 kb on - strand, within HMPREF1058_RS15925 at 807.988 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.213 kb on + strand, within HMPREF1058_RS15925 at 808.214 kb on - strand, within HMPREF1058_RS15925 at 808.216 kb on + strand, within HMPREF1058_RS15925 at 808.309 kb on + strand, within HMPREF1058_RS15925 at 808.313 kb on + strand, within HMPREF1058_RS15925 at 808.314 kb on - strand, within HMPREF1058_RS15925 at 808.315 kb on + strand, within HMPREF1058_RS15925 at 808.316 kb on - strand, within HMPREF1058_RS15925 at 808.372 kb on + strand, within HMPREF1058_RS15925 at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.488 kb on - strand at 808.524 kb on - strand at 808.540 kb on + strand at 808.540 kb on + strand at 808.541 kb on - strand at 808.603 kb on - strand at 808.603 kb on - strand at 808.607 kb on - strand at 808.625 kb on + strand at 808.665 kb on - strand at 808.770 kb on + strand at 808.781 kb on + strand at 808.781 kb on + strand at 808.782 kb on - strand at 808.836 kb on - strand, within HMPREF1058_RS15920 at 808.872 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand at 808.896 kb on - strand, within HMPREF1058_RS15920 at 808.983 kb on + strand at 808.984 kb on - strand at 808.987 kb on + strand at 809.052 kb on + strand at 809.158 kb on - strand, within HMPREF1058_RS15915 at 809.163 kb on - strand, within HMPREF1058_RS15915 at 809.188 kb on + strand, within HMPREF1058_RS15915 at 809.257 kb on - strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.559 kb on - strand, within HMPREF1058_RS15915 at 809.602 kb on + strand at 809.603 kb on - strand at 809.628 kb on - strand at 809.644 kb on - strand at 809.644 kb on - strand at 809.645 kb on + strand at 809.646 kb on - strand at 809.646 kb on - strand at 809.646 kb on - strand at 809.650 kb on - strand at 809.701 kb on + strand at 809.702 kb on - strand at 809.714 kb on - strand at 809.717 kb on - strand at 809.718 kb on + strand at 809.890 kb on + strand, within HMPREF1058_RS15910 at 809.896 kb on + strand, within HMPREF1058_RS15910 at 809.897 kb on - strand, within HMPREF1058_RS15910 at 809.922 kb on + strand, within HMPREF1058_RS15910 at 809.922 kb on + strand, within HMPREF1058_RS15910 at 809.950 kb on + strand, within HMPREF1058_RS15910 at 809.951 kb on - strand, within HMPREF1058_RS15910
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 807,779 - +1.4 807,818 - HMPREF1058_RS15925 0.50 -1.6 807,820 - HMPREF1058_RS15925 0.51 -0.8 807,820 - HMPREF1058_RS15925 0.51 +0.8 807,823 + HMPREF1058_RS15925 0.51 -0.3 807,881 - HMPREF1058_RS15925 0.55 -0.6 807,886 + HMPREF1058_RS15925 0.55 -1.4 807,970 - HMPREF1058_RS15925 0.61 -1.3 807,988 + HMPREF1058_RS15925 0.62 -0.1 808,172 + HMPREF1058_RS15925 0.75 -0.2 808,172 + HMPREF1058_RS15925 0.75 -0.4 808,213 + HMPREF1058_RS15925 0.78 +0.3 808,214 - HMPREF1058_RS15925 0.78 -1.3 808,216 + HMPREF1058_RS15925 0.78 -0.1 808,309 + HMPREF1058_RS15925 0.84 +0.2 808,313 + HMPREF1058_RS15925 0.84 -2.3 808,314 - HMPREF1058_RS15925 0.84 -1.1 808,315 + HMPREF1058_RS15925 0.84 +0.3 808,316 - HMPREF1058_RS15925 0.85 +0.1 808,372 + HMPREF1058_RS15925 0.88 +0.9 808,483 + -0.7 808,483 + -0.7 808,483 + +0.9 808,483 + -1.4 808,483 + +1.1 808,483 + -0.4 808,483 + -2.2 808,484 - -0.8 808,484 - -0.1 808,484 - -0.7 808,488 - -0.1 808,524 - -0.3 808,540 + -0.5 808,540 + +0.9 808,541 - +0.5 808,603 - -0.6 808,603 - -0.7 808,607 - +0.8 808,625 + +0.9 808,665 - -0.8 808,770 + +0.9 808,781 + -0.2 808,781 + -0.5 808,782 - +0.4 808,836 - HMPREF1058_RS15920 0.32 +0.6 808,872 + HMPREF1058_RS15920 0.48 -0.1 808,895 + HMPREF1058_RS15920 0.58 -0.6 808,895 + +1.8 808,896 - HMPREF1058_RS15920 0.59 +0.6 808,983 + -0.6 808,984 - +0.0 808,987 + -1.3 809,052 + +0.2 809,158 - HMPREF1058_RS15915 0.24 +1.6 809,163 - HMPREF1058_RS15915 0.25 +0.1 809,188 + HMPREF1058_RS15915 0.29 -0.6 809,257 - HMPREF1058_RS15915 0.40 +1.2 809,521 + HMPREF1058_RS15915 0.83 +0.5 809,521 + HMPREF1058_RS15915 0.83 +0.5 809,521 + HMPREF1058_RS15915 0.83 -0.8 809,559 - HMPREF1058_RS15915 0.89 -0.7 809,602 + +0.2 809,603 - +0.3 809,628 - -0.1 809,644 - -3.7 809,644 - +1.2 809,645 + +0.1 809,646 - +4.4 809,646 - +0.1 809,646 - +2.8 809,650 - -0.2 809,701 + -1.0 809,702 - -1.2 809,714 - +0.6 809,717 - -0.5 809,718 + +0.5 809,890 + HMPREF1058_RS15910 0.49 +0.1 809,896 + HMPREF1058_RS15910 0.51 +0.3 809,897 - HMPREF1058_RS15910 0.51 -0.6 809,922 + HMPREF1058_RS15910 0.60 +0.8 809,922 + HMPREF1058_RS15910 0.60 +0.5 809,950 + HMPREF1058_RS15910 0.69 -0.6 809,951 - HMPREF1058_RS15910 0.69 -1.4
Or see this region's nucleotide sequence