Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15765 and HMPREF1058_RS15760 are separated by 43 nucleotides HMPREF1058_RS15760 and HMPREF1058_RS15755 are separated by 368 nucleotides
HMPREF1058_RS15765: HMPREF1058_RS15765 - ABC transporter permease, at 841,614 to 842,906
_RS15765
HMPREF1058_RS15760: HMPREF1058_RS15760 - ABC transporter ATP-binding protein, at 842,950 to 843,615
_RS15760
HMPREF1058_RS15755: HMPREF1058_RS15755 - HlyD family efflux transporter periplasmic adaptor subunit, at 843,984 to 845,231
_RS15755
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 841.979 kb on + strand, within HMPREF1058_RS15765 at 842.104 kb on + strand, within HMPREF1058_RS15765 at 842.129 kb on + strand, within HMPREF1058_RS15765 at 842.151 kb on - strand, within HMPREF1058_RS15765 at 842.157 kb on - strand, within HMPREF1058_RS15765 at 842.158 kb on + strand, within HMPREF1058_RS15765 at 842.265 kb on - strand, within HMPREF1058_RS15765 at 842.330 kb on + strand, within HMPREF1058_RS15765 at 842.330 kb on + strand, within HMPREF1058_RS15765 at 842.331 kb on - strand, within HMPREF1058_RS15765 at 842.529 kb on - strand, within HMPREF1058_RS15765 at 842.643 kb on - strand, within HMPREF1058_RS15765 at 842.644 kb on + strand, within HMPREF1058_RS15765 at 842.644 kb on + strand, within HMPREF1058_RS15765 at 842.646 kb on + strand, within HMPREF1058_RS15765 at 842.646 kb on + strand, within HMPREF1058_RS15765 at 842.712 kb on - strand, within HMPREF1058_RS15765 at 842.714 kb on + strand, within HMPREF1058_RS15765 at 842.715 kb on - strand, within HMPREF1058_RS15765 at 842.720 kb on + strand, within HMPREF1058_RS15765 at 842.721 kb on - strand, within HMPREF1058_RS15765 at 842.721 kb on - strand at 842.723 kb on - strand, within HMPREF1058_RS15765 at 842.788 kb on - strand at 842.923 kb on + strand at 842.948 kb on - strand at 843.166 kb on + strand, within HMPREF1058_RS15760 at 843.213 kb on + strand, within HMPREF1058_RS15760 at 843.285 kb on + strand, within HMPREF1058_RS15760 at 843.286 kb on - strand, within HMPREF1058_RS15760 at 843.330 kb on + strand, within HMPREF1058_RS15760 at 843.480 kb on + strand, within HMPREF1058_RS15760 at 843.481 kb on - strand, within HMPREF1058_RS15760 at 843.481 kb on - strand, within HMPREF1058_RS15760 at 843.652 kb on + strand at 843.652 kb on + strand at 843.653 kb on - strand at 843.729 kb on + strand at 843.730 kb on - strand at 843.772 kb on + strand at 843.823 kb on + strand at 843.854 kb on + strand at 843.854 kb on + strand at 843.870 kb on + strand at 843.939 kb on - strand at 843.939 kb on - strand at 843.942 kb on + strand at 843.974 kb on + strand at 844.016 kb on - strand at 844.089 kb on - strand at 844.172 kb on - strand, within HMPREF1058_RS15755 at 844.226 kb on - strand, within HMPREF1058_RS15755 at 844.226 kb on - strand, within HMPREF1058_RS15755 at 844.227 kb on + strand, within HMPREF1058_RS15755 at 844.228 kb on - strand, within HMPREF1058_RS15755 at 844.228 kb on - strand, within HMPREF1058_RS15755 at 844.228 kb on - strand, within HMPREF1058_RS15755 at 844.228 kb on - strand at 844.265 kb on + strand, within HMPREF1058_RS15755 at 844.282 kb on - strand, within HMPREF1058_RS15755 at 844.308 kb on - strand, within HMPREF1058_RS15755 at 844.329 kb on + strand, within HMPREF1058_RS15755 at 844.400 kb on - strand, within HMPREF1058_RS15755 at 844.400 kb on - strand, within HMPREF1058_RS15755 at 844.411 kb on - strand, within HMPREF1058_RS15755 at 844.452 kb on - strand, within HMPREF1058_RS15755 at 844.493 kb on + strand, within HMPREF1058_RS15755 at 844.497 kb on + strand, within HMPREF1058_RS15755 at 844.498 kb on - strand, within HMPREF1058_RS15755 at 844.498 kb on - strand, within HMPREF1058_RS15755 at 844.498 kb on - strand, within HMPREF1058_RS15755 at 844.501 kb on + strand, within HMPREF1058_RS15755 at 844.502 kb on - strand, within HMPREF1058_RS15755 at 844.505 kb on + strand, within HMPREF1058_RS15755 at 844.506 kb on - strand, within HMPREF1058_RS15755
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 841,979 + HMPREF1058_RS15765 0.28 -0.6 842,104 + HMPREF1058_RS15765 0.38 +1.6 842,129 + HMPREF1058_RS15765 0.40 +0.9 842,151 - HMPREF1058_RS15765 0.42 -0.2 842,157 - HMPREF1058_RS15765 0.42 -0.3 842,158 + HMPREF1058_RS15765 0.42 -1.1 842,265 - HMPREF1058_RS15765 0.50 -0.9 842,330 + HMPREF1058_RS15765 0.55 +1.6 842,330 + HMPREF1058_RS15765 0.55 +0.0 842,331 - HMPREF1058_RS15765 0.55 -1.7 842,529 - HMPREF1058_RS15765 0.71 -0.3 842,643 - HMPREF1058_RS15765 0.80 -2.4 842,644 + HMPREF1058_RS15765 0.80 -0.8 842,644 + HMPREF1058_RS15765 0.80 -0.7 842,646 + HMPREF1058_RS15765 0.80 -0.3 842,646 + HMPREF1058_RS15765 0.80 -0.4 842,712 - HMPREF1058_RS15765 0.85 +1.2 842,714 + HMPREF1058_RS15765 0.85 +0.7 842,715 - HMPREF1058_RS15765 0.85 -0.5 842,720 + HMPREF1058_RS15765 0.86 +1.9 842,721 - HMPREF1058_RS15765 0.86 +0.9 842,721 - +0.9 842,723 - HMPREF1058_RS15765 0.86 +0.1 842,788 - +0.8 842,923 + -0.1 842,948 - +0.4 843,166 + HMPREF1058_RS15760 0.32 +1.5 843,213 + HMPREF1058_RS15760 0.39 -0.9 843,285 + HMPREF1058_RS15760 0.50 -1.6 843,286 - HMPREF1058_RS15760 0.50 -0.1 843,330 + HMPREF1058_RS15760 0.57 -1.3 843,480 + HMPREF1058_RS15760 0.80 -0.4 843,481 - HMPREF1058_RS15760 0.80 -1.6 843,481 - HMPREF1058_RS15760 0.80 -0.4 843,652 + -0.4 843,652 + -1.4 843,653 - -0.8 843,729 + +0.4 843,730 - -1.1 843,772 + -0.4 843,823 + -1.6 843,854 + -0.5 843,854 + -1.1 843,870 + +0.1 843,939 - -0.7 843,939 - -0.1 843,942 + -0.4 843,974 + +0.1 844,016 - -0.2 844,089 - +0.7 844,172 - HMPREF1058_RS15755 0.15 -1.7 844,226 - HMPREF1058_RS15755 0.19 +1.8 844,226 - HMPREF1058_RS15755 0.19 +0.8 844,227 + HMPREF1058_RS15755 0.19 +1.1 844,228 - HMPREF1058_RS15755 0.20 +0.0 844,228 - HMPREF1058_RS15755 0.20 +1.6 844,228 - HMPREF1058_RS15755 0.20 +0.5 844,228 - +1.6 844,265 + HMPREF1058_RS15755 0.23 +0.6 844,282 - HMPREF1058_RS15755 0.24 +1.1 844,308 - HMPREF1058_RS15755 0.26 +0.1 844,329 + HMPREF1058_RS15755 0.28 +1.3 844,400 - HMPREF1058_RS15755 0.33 -0.4 844,400 - HMPREF1058_RS15755 0.33 +0.4 844,411 - HMPREF1058_RS15755 0.34 -0.6 844,452 - HMPREF1058_RS15755 0.38 +0.1 844,493 + HMPREF1058_RS15755 0.41 +0.2 844,497 + HMPREF1058_RS15755 0.41 -0.2 844,498 - HMPREF1058_RS15755 0.41 +3.4 844,498 - HMPREF1058_RS15755 0.41 -0.0 844,498 - HMPREF1058_RS15755 0.41 +2.4 844,501 + HMPREF1058_RS15755 0.41 -1.0 844,502 - HMPREF1058_RS15755 0.42 +0.4 844,505 + HMPREF1058_RS15755 0.42 +0.7 844,506 - HMPREF1058_RS15755 0.42 +1.3
Or see this region's nucleotide sequence