Experiment: Lacto-N-tetraose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15265 and HMPREF1058_RS15260 are separated by 288 nucleotides HMPREF1058_RS15260 and HMPREF1058_RS15255 are separated by 14 nucleotides HMPREF1058_RS15255 and HMPREF1058_RS15250 are separated by 22 nucleotides
HMPREF1058_RS15265: HMPREF1058_RS15265 - queuosine precursor transporter, at 962,811 to 963,497
_RS15265
HMPREF1058_RS15260: HMPREF1058_RS15260 - ornithine--oxo-acid transaminase, at 963,786 to 965,021
_RS15260
HMPREF1058_RS15255: HMPREF1058_RS15255 - hypothetical protein, at 965,036 to 965,947
_RS15255
HMPREF1058_RS15250: HMPREF1058_RS15250 - hypothetical protein, at 965,970 to 966,890
_RS15250
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 962.887 kb on + strand, within HMPREF1058_RS15265 at 962.887 kb on + strand, within HMPREF1058_RS15265 at 963.047 kb on + strand, within HMPREF1058_RS15265 at 963.329 kb on + strand, within HMPREF1058_RS15265 at 963.346 kb on + strand, within HMPREF1058_RS15265 at 963.347 kb on - strand at 963.438 kb on + strand at 963.439 kb on - strand at 963.439 kb on - strand at 963.477 kb on + strand at 963.478 kb on - strand at 963.478 kb on - strand at 963.478 kb on - strand at 963.485 kb on + strand at 963.486 kb on - strand at 963.524 kb on - strand at 963.529 kb on - strand at 963.612 kb on + strand at 963.835 kb on - strand at 963.848 kb on + strand at 963.879 kb on - strand at 964.069 kb on + strand, within HMPREF1058_RS15260 at 964.069 kb on + strand, within HMPREF1058_RS15260 at 964.070 kb on - strand, within HMPREF1058_RS15260 at 964.101 kb on + strand, within HMPREF1058_RS15260 at 964.402 kb on + strand, within HMPREF1058_RS15260 at 964.402 kb on + strand, within HMPREF1058_RS15260 at 964.403 kb on - strand, within HMPREF1058_RS15260 at 964.403 kb on - strand, within HMPREF1058_RS15260 at 964.540 kb on + strand, within HMPREF1058_RS15260 at 964.540 kb on + strand, within HMPREF1058_RS15260 at 964.605 kb on + strand, within HMPREF1058_RS15260 at 964.683 kb on + strand, within HMPREF1058_RS15260 at 964.824 kb on - strand, within HMPREF1058_RS15260 at 964.885 kb on + strand, within HMPREF1058_RS15260 at 964.889 kb on - strand, within HMPREF1058_RS15260 at 964.957 kb on + strand at 964.957 kb on + strand at 964.957 kb on + strand at 965.123 kb on - strand at 965.123 kb on - strand at 965.140 kb on - strand, within HMPREF1058_RS15255 at 965.143 kb on + strand, within HMPREF1058_RS15255 at 965.144 kb on - strand, within HMPREF1058_RS15255 at 965.157 kb on - strand, within HMPREF1058_RS15255 at 965.182 kb on - strand, within HMPREF1058_RS15255 at 965.182 kb on - strand, within HMPREF1058_RS15255 at 965.201 kb on + strand, within HMPREF1058_RS15255 at 965.239 kb on + strand, within HMPREF1058_RS15255 at 965.240 kb on - strand, within HMPREF1058_RS15255 at 965.599 kb on + strand, within HMPREF1058_RS15255 at 965.600 kb on - strand, within HMPREF1058_RS15255 at 965.654 kb on - strand, within HMPREF1058_RS15255 at 965.692 kb on + strand, within HMPREF1058_RS15255 at 965.693 kb on - strand, within HMPREF1058_RS15255 at 965.693 kb on - strand, within HMPREF1058_RS15255 at 965.693 kb on - strand, within HMPREF1058_RS15255 at 965.762 kb on - strand, within HMPREF1058_RS15255 at 965.792 kb on + strand, within HMPREF1058_RS15255 at 965.792 kb on + strand, within HMPREF1058_RS15255 at 965.858 kb on + strand at 965.858 kb on + strand at 965.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lacto-N-tetraose 10 mg/mL (C) remove 962,887 + HMPREF1058_RS15265 0.11 +1.1 962,887 + HMPREF1058_RS15265 0.11 -1.6 963,047 + HMPREF1058_RS15265 0.34 -0.7 963,329 + HMPREF1058_RS15265 0.75 +1.8 963,346 + HMPREF1058_RS15265 0.78 +1.2 963,347 - +1.2 963,438 + +0.6 963,439 - +0.2 963,439 - -0.9 963,477 + +0.2 963,478 - -1.2 963,478 - -0.4 963,478 - +1.8 963,485 + -0.8 963,486 - -0.1 963,524 - -1.2 963,529 - +1.8 963,612 + +1.2 963,835 - +0.4 963,848 + -0.1 963,879 - -0.8 964,069 + HMPREF1058_RS15260 0.23 -2.6 964,069 + HMPREF1058_RS15260 0.23 -0.8 964,070 - HMPREF1058_RS15260 0.23 -2.1 964,101 + HMPREF1058_RS15260 0.25 -0.8 964,402 + HMPREF1058_RS15260 0.50 +1.7 964,402 + HMPREF1058_RS15260 0.50 -0.8 964,403 - HMPREF1058_RS15260 0.50 +1.0 964,403 - HMPREF1058_RS15260 0.50 -1.0 964,540 + HMPREF1058_RS15260 0.61 -0.6 964,540 + HMPREF1058_RS15260 0.61 -0.8 964,605 + HMPREF1058_RS15260 0.66 -1.6 964,683 + HMPREF1058_RS15260 0.73 -0.5 964,824 - HMPREF1058_RS15260 0.84 -1.1 964,885 + HMPREF1058_RS15260 0.89 -0.8 964,889 - HMPREF1058_RS15260 0.89 -1.4 964,957 + -1.4 964,957 + -0.9 964,957 + -0.7 965,123 - -0.2 965,123 - -0.1 965,140 - HMPREF1058_RS15255 0.11 -1.1 965,143 + HMPREF1058_RS15255 0.12 -0.4 965,144 - HMPREF1058_RS15255 0.12 -1.2 965,157 - HMPREF1058_RS15255 0.13 -0.2 965,182 - HMPREF1058_RS15255 0.16 -1.4 965,182 - HMPREF1058_RS15255 0.16 -1.3 965,201 + HMPREF1058_RS15255 0.18 +0.9 965,239 + HMPREF1058_RS15255 0.22 +0.5 965,240 - HMPREF1058_RS15255 0.22 -1.0 965,599 + HMPREF1058_RS15255 0.62 +0.5 965,600 - HMPREF1058_RS15255 0.62 +0.3 965,654 - HMPREF1058_RS15255 0.68 +2.4 965,692 + HMPREF1058_RS15255 0.72 +0.4 965,693 - HMPREF1058_RS15255 0.72 -0.9 965,693 - HMPREF1058_RS15255 0.72 -0.7 965,693 - HMPREF1058_RS15255 0.72 +0.1 965,762 - HMPREF1058_RS15255 0.80 -0.9 965,792 + HMPREF1058_RS15255 0.83 -0.0 965,792 + HMPREF1058_RS15255 0.83 -1.9 965,858 + +2.0 965,858 + +0.3 965,859 - -0.8
Or see this region's nucleotide sequence