Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14795

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,100,223	-		HMPREF1058_RS14805	0.66	-0.3
1,100,224	+		HMPREF1058_RS14805	0.66	+1.8
1,100,301	+		HMPREF1058_RS14805	0.80	+0.1
1,100,302	-		HMPREF1058_RS14805	0.81	-0.7
1,100,317	+		HMPREF1058_RS14805	0.83	-1.8
1,100,416	-				-0.2
1,100,467	-				+0.1
1,100,475	+				-1.3
1,100,543	+				-0.3
1,100,585	+				-1.8
1,100,585	+				-0.7
1,100,638	-		HMPREF1058_RS14800	0.12	-0.7
1,100,665	+		HMPREF1058_RS14800	0.20	-0.2
1,100,666	-		HMPREF1058_RS14800	0.20	-0.9
1,100,666	-		HMPREF1058_RS14800	0.20	+1.4
1,100,686	-		HMPREF1058_RS14800	0.26	+0.4
1,100,722	+		HMPREF1058_RS14800	0.36	-1.0
1,100,749	+		HMPREF1058_RS14800	0.43	-0.8
1,100,750	-		HMPREF1058_RS14800	0.44	-0.8
1,100,790	+		HMPREF1058_RS14800	0.55	-0.6
1,100,807	+		HMPREF1058_RS14800	0.60	+0.4
1,100,808	-		HMPREF1058_RS14800	0.60	-0.3
1,100,835	-		HMPREF1058_RS14800	0.68	+0.5
1,100,865	+		HMPREF1058_RS14800	0.76	-0.8
1,100,872	+		HMPREF1058_RS14800	0.78	-1.0
1,100,872	+		HMPREF1058_RS14800	0.78	-1.0
1,100,874	+		HMPREF1058_RS14800	0.78	-1.0
1,100,874	+		HMPREF1058_RS14800	0.78	+0.8
1,100,875	-		HMPREF1058_RS14800	0.79	-0.0
1,100,875	-		HMPREF1058_RS14800	0.79	-0.4
1,100,883	+		HMPREF1058_RS14800	0.81	-0.6
1,100,887	-		HMPREF1058_RS14800	0.82	-0.9
1,100,917	+				+1.4
1,100,979	-				-2.2
1,100,998	-				-2.2
1,101,050	+				+0.3
1,101,051	-				-0.8
1,101,055	+				-0.3
1,101,060	-				-0.5
1,101,114	+				-1.9
1,101,114	+				-2.3
1,101,115	-				-0.5
1,101,115	-				-1.5
1,101,115	-				+0.7
1,101,115	-				+2.0
1,101,121	-				+0.2
1,101,152	+				-2.5
1,101,152	+				-0.7
1,101,197	+				-1.5
1,101,198	-				-0.2
1,101,199	+				-0.0
1,101,200	-				+0.6
1,101,200	-				-0.5
1,101,201	+				-1.1
1,101,201	+				-2.1
1,101,202	-				+0.4
1,101,203	+				+2.6
1,101,203	+				-2.6
1,101,218	+				-3.4
1,101,224	+				-4.1
1,101,225	-				-0.5
1,101,225	-				-0.2
1,101,333	-		HMPREF1058_RS14795	0.15	-0.2
1,101,662	-		HMPREF1058_RS14795	0.54	-2.6
1,101,770	+		HMPREF1058_RS14795	0.67	+2.8
1,101,770	+		HMPREF1058_RS14795	0.67	-0.0
1,101,770	+		HMPREF1058_RS14795	0.67	-3.4
1,101,770	+		HMPREF1058_RS14795	0.67	+0.6
1,101,872	+		HMPREF1058_RS14795	0.79	-3.7
1,101,873	-		HMPREF1058_RS14795	0.79	+0.7
1,101,922	+		HMPREF1058_RS14795	0.85	-3.0
1,101,931	+		HMPREF1058_RS14795	0.86	-1.8
1,101,959	+		HMPREF1058_RS14795	0.89	-1.7
1,101,959	+		HMPREF1058_RS14795	0.89	-2.5
1,101,959	+		HMPREF1058_RS14795	0.89	-0.5
1,101,964	+		HMPREF1058_RS14795	0.90	-1.7
1,101,965	-		HMPREF1058_RS14795	0.90	+1.0
1,102,046	+				-2.1
1,102,046	+				+0.4
1,102,046	+				-2.2
1,102,048	+				+0.9
1,102,048	+				+1.0
1,102,049	-				+3.4
1,102,049	-				-1.2
1,102,049	-				+1.4
1,102,051	+				-3.3
1,102,312	-		HMPREF1058_RS14790	0.24	+0.0
1,102,432	+		HMPREF1058_RS14790	0.34	-1.4
1,102,432	+		HMPREF1058_RS14790	0.34	-2.4
1,102,433	-		HMPREF1058_RS14790	0.34	-2.2
1,102,437	-		HMPREF1058_RS14790	0.35	+0.5
1,102,437	-		HMPREF1058_RS14790	0.35	+0.9
1,102,446	+		HMPREF1058_RS14790	0.36	-3.4
1,102,447	-		HMPREF1058_RS14790	0.36	-0.0
1,102,450	+		HMPREF1058_RS14790	0.36	-1.7
1,102,451	-		HMPREF1058_RS14790	0.36	-1.2
1,102,568	+		HMPREF1058_RS14790	0.46	-1.9
1,102,645	+		HMPREF1058_RS14790	0.52	-2.6
1,102,646	-		HMPREF1058_RS14790	0.52	-1.0
1,102,646	-		HMPREF1058_RS14790	0.52	-1.7
1,102,656	+		HMPREF1058_RS14790	0.53	-1.1
1,102,702	+		HMPREF1058_RS14790	0.57	-0.4
1,102,703	-		HMPREF1058_RS14790	0.57	-1.0
1,102,750	+		HMPREF1058_RS14790	0.61	-2.3
1,102,814	-		HMPREF1058_RS14790	0.67	+1.0
1,102,816	-		HMPREF1058_RS14790	0.67	-0.9
1,102,816	-		HMPREF1058_RS14790	0.67	-2.8
1,102,816	-		HMPREF1058_RS14790	0.67	+0.4
1,102,840	+		HMPREF1058_RS14790	0.69	+0.1
1,102,843	+		HMPREF1058_RS14790	0.69	-2.0
1,102,892	+		HMPREF1058_RS14790	0.73	-0.3
1,102,893	-		HMPREF1058_RS14790	0.73	-2.1
1,102,935	+		HMPREF1058_RS14790	0.77	-0.2
1,102,935	+		HMPREF1058_RS14790	0.77	-2.5
1,102,935	+		HMPREF1058_RS14790	0.77	-0.9
1,102,936	-		HMPREF1058_RS14790	0.77	+1.2
1,102,940	-		HMPREF1058_RS14790	0.77	+0.4
1,102,977	+		HMPREF1058_RS14790	0.80	-3.6
1,103,012	-		HMPREF1058_RS14790	0.83	-1.3