Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14770

Experiment: Lacto-N-tetraose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lacto-N-tetraose 10 mg/mL (C)
1,106,474	+		HMPREF1058_RS14775	0.35	-1.7
1,106,523	-		HMPREF1058_RS14775	0.41	+0.4
1,106,523	-		HMPREF1058_RS14775	0.41	+0.3
1,106,530	+		HMPREF1058_RS14775	0.42	+2.4
1,106,531	-		HMPREF1058_RS14775	0.42	-0.3
1,106,537	+		HMPREF1058_RS14775	0.43	-1.2
1,106,600	+		HMPREF1058_RS14775	0.52	-0.1
1,106,619	-		HMPREF1058_RS14775	0.54	+0.9
1,106,619	-		HMPREF1058_RS14775	0.54	-0.4
1,106,622	+		HMPREF1058_RS14775	0.55	-1.0
1,106,622	+		HMPREF1058_RS14775	0.55	-1.4
1,106,622	+		HMPREF1058_RS14775	0.55	-1.6
1,106,622	+		HMPREF1058_RS14775	0.55	-1.0
1,106,625	-		HMPREF1058_RS14775	0.55	+0.8
1,106,641	-		HMPREF1058_RS14775	0.57	-0.8
1,106,641	-		HMPREF1058_RS14775	0.57	-0.5
1,106,655	+		HMPREF1058_RS14775	0.59	+0.6
1,106,656	-		HMPREF1058_RS14775	0.59	-3.0
1,106,656	-		HMPREF1058_RS14775	0.59	-0.4
1,106,664	+		HMPREF1058_RS14775	0.60	+0.4
1,106,716	-		HMPREF1058_RS14775	0.67	-2.2
1,106,803	-		HMPREF1058_RS14775	0.79	+0.3
1,106,810	+		HMPREF1058_RS14775	0.80	-1.2
1,107,220	+				+0.4
1,107,277	-				-1.2
1,107,278	+				-0.5
1,107,279	-				-0.5
1,107,279	-				-0.2
1,107,282	+				-1.1
1,107,283	-				+0.0
1,107,297	+				+0.7
1,107,334	+				+0.4
1,107,334	+				-0.0
1,107,334	+				-1.5
1,107,335	-				-0.2
1,107,428	-				-1.8
1,107,442	-				-1.7
1,107,445	-				-1.2
1,107,445	-				-0.6
1,107,516	+				-2.4
1,107,517	-				-2.1
1,107,684	+		HMPREF1058_RS14770	0.28	-1.0
1,107,780	+		HMPREF1058_RS14770	0.41	-3.8
1,107,780	+		HMPREF1058_RS14770	0.41	-3.4
1,107,781	-		HMPREF1058_RS14770	0.41	+3.4
1,107,781	-		HMPREF1058_RS14770	0.41	-1.0
1,107,894	+		HMPREF1058_RS14770	0.56	-2.4
1,107,894	+		HMPREF1058_RS14770	0.56	+0.0
1,107,896	+		HMPREF1058_RS14770	0.56	+0.0
1,107,897	-		HMPREF1058_RS14770	0.56	-1.8
1,107,928	+		HMPREF1058_RS14770	0.60	-0.8
1,107,929	-		HMPREF1058_RS14770	0.60	-0.0
1,107,959	+		HMPREF1058_RS14770	0.64	-0.0
1,108,034	-		HMPREF1058_RS14770	0.74	-2.5
1,108,131	+		HMPREF1058_RS14770	0.86	-4.2
1,108,144	+		HMPREF1058_RS14770	0.88	-2.7
1,108,153	-		HMPREF1058_RS14770	0.89	+0.9
1,108,235	+				-0.2
1,108,235	+				-1.0
1,108,253	+				-0.6
1,108,254	-				-1.7
1,108,254	-				-1.2
1,108,254	-				-0.2
1,108,332	-		HMPREF1058_RS21590	0.18	-0.0
1,108,332	-		HMPREF1058_RS21590	0.18	+0.5
1,108,462	+				-1.6
1,108,520	-				-1.8
1,108,747	-		HMPREF1058_RS14765	0.28	+0.7
1,108,912	+		HMPREF1058_RS14765	0.45	+0.2
1,108,951	+		HMPREF1058_RS14765	0.49	+3.4
1,108,951	+		HMPREF1058_RS14765	0.49	-1.8
1,108,953	+		HMPREF1058_RS14765	0.49	-0.5
1,109,088	+		HMPREF1058_RS14765	0.63	-0.2
1,109,215	+		HMPREF1058_RS14765	0.76	-1.8